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    AFP3 ABI five binding protein 3 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822619, updated on 18-Sep-2024

    Summary

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    Official Symbol
    AFP3
    Official Full Name
    ABI five binding protein 3
    Primary source
    TAIR:AT3G29575
    Locus tag
    AT3G29575
    See related
    Araport:AT3G29575
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ABI five binding protein 3
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    Genomic context

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    See AFP3 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (11382214..11384145, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene miscRNA Neighboring gene pseudo Neighboring gene ncRNA Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. NINJA connects the co-repressor TOPLESS to jasmonate signalling. Pauwels L, et al. Nature, 2010 Apr 1. PMID 20360743, Free PMC Article
    2. The TOPLESS interactome: a framework for gene repression in Arabidopsis. Causier B, et al. Plant Physiol, 2012 Jan. PMID 22065421, Free PMC Article
    3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001035717.2
    NM_001084753.2
    NM_113878.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ABI five binding protein 3
    NP_001030794.1
    • ABI five binding protein 3 (AFP3); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1675 (InterPro:IPR012463); BEST Arabidopsis thaliana protein match is: ABI five binding protein (TAIR:AT1G69260.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_001078222.1
    • ABI five binding protein 3 (AFP3); FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1675 (InterPro:IPR012463); BEST Arabidopsis thaliana protein match is: ABI five binding protein (TAIR:AT1G69260.1); Has 196 Blast hits to 190 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 4; Plants - 184; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
    NP_189598.1
    • ABI five binding protein 3 (AFP3); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1675 (InterPro:IPR012463); BEST Arabidopsis thaliana protein match is: ABI five binding protein (TAIR:AT1G69260.1); Has 196 Blast hits to 190 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 4; Plants - 184; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      11382214..11384145 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113878.5 → NP_189598.1  ABI five binding protein 3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_189598.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q94F39, Q9LH16
      UniProtKB/TrEMBL
      A0A7G2ETQ6
      Conserved Domains (3) summary
      pfam07897
      Location:11 → 46
      EAR; Ethylene-responsive binding factor-associated repression
      pfam16135
      Location:173 → 224
      Jas; TPL-binding domain in jasmonate signalling
      pfam16136
      Location:55 → 100
      NINJA_B; Putative nuclear localization signal

    2. NM_001084753.2 → NP_001078222.1  ABI five binding protein 3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078222.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q94F39, Q9LH16
      UniProtKB/TrEMBL
      A0A7G2ETQ6
      Conserved Domains (3) summary
      pfam07897
      Location:11 → 46
      EAR; Ethylene-responsive binding factor-associated repression
      pfam16135
      Location:173 → 224
      Jas; TPL-binding domain in jasmonate signalling
      pfam16136
      Location:55 → 100
      NINJA_B; Putative nuclear localization signal

    3. NM_001035717.2 → NP_001030794.1  ABI five binding protein 3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001030794.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q94F39, Q9LH16
      UniProtKB/TrEMBL
      A0A7G2ETQ6
      Conserved Domains (3) summary
      pfam07897
      Location:11 → 46
      EAR; Ethylene-responsive binding factor-associated repression
      pfam16135
      Location:173 → 224
      Jas; TPL-binding domain in jasmonate signalling
      pfam16136
      Location:55 → 100
      NINJA_B; Putative nuclear localization signal
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q94F39.1

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