coiled-coil protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: coiled-coil protein
Primary source: TAIR:AT3G48860
Locus tag: AT3G48860
See related: Araport:AT3G48860
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: SCD2; STOMATAL CYTOKINESIS DEFECTIVE 2
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 3

Exon count:: 16

Sequence:: Chromosome: 3; NC_003074.8 (18117237..18122812)

Chromosome 3 - NC_003074.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

SCD1 and SCD2 function in clathrin-mediated membrane trafficking essential to both cytokinesis and cell expansion.
Title: Mediation of clathrin-dependent trafficking during cytokinesis and cell expansion by Arabidopsis stomatal cytokinesis defective proteins.

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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NM_114745.6

Supported by ESTs:

NM_180683.3

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in cytokinesis by cell plate formation	IEA Inferred from Electronic Annotation more info
involved_in cytokinesis by cell plate formation	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in multidimensional cell growth	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
located_in chloroplast	ISM Inferred from Sequence Model more info
located_in clathrin-coated vesicle	IDA Inferred from Direct Assay more info	PubMed
located_in nucleus	ISM Inferred from Sequence Model more info
located_in plasma membrane	IDA Inferred from Direct Assay more info	PubMed

General protein information

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Preferred Names: coiled-coil protein

NP_190455.2

unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23700.1); Has 12429 Blast hits to 9751 proteins in 897 species: Archae - 180; Bacteria - 1190; Metazoa - 6552; Fungi - 1361; Plants - 886; Viruses - 50; Other Eukaryotes - 2210 (source: NCBI BLink).

NP_851014.1

unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23700.1); Has 12232 Blast hits to 9546 proteins in 892 species: Archae - 172; Bacteria - 1174; Metazoa - 6487; Fungi - 1343; Plants - 856; Viruses - 50; Other Eukaryotes - 2150 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003074.8 Reference assembly

Range

18117237..18122812

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001339384.1 → NP_001325715.1 coiled-coil protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1I9LM32
NM_114745.6 → NP_190455.2 coiled-coil protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_190455.2

Status: REVIEWED

UniProtKB/Swiss-Prot

Q8RWD5, Q9M2Z7

UniProtKB/TrEMBL

A0A178V7R6, A0A5S9XJX8

Conserved Domains (1) summary

TIGR02168
Location:212 → 344

SMC_prok_B; chromosome segregation protein SMC, common bacterial type
NM_180683.3 → NP_851014.1 coiled-coil protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_851014.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A5S9XJX8, F4JF62

Conserved Domains (2) summary

pfam10473
Location:203 → 340

CENP-F_leu_zip; Leucine-rich repeats of kinetochore protein Cenp-F/LEK1

cl09111
Location:211 → 321

Prefoldin; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits ...