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    SNF7 family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825381, updated on 18-Sep-2024

    Summary

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    Official Full Name
    SNF7 family protein
    Primary source
    TAIR:AT3G62080
    Locus tag
    AT3G62080
    See related
    Araport:AT3G62080
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    9
    Sequence:
    Chromosome: 3; NC_003074.8 (22986174..22988777)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Pectinacetylesterase family protein Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene phytochrome interacting factor 3-like 2 Neighboring gene indole-3-acetic acid inducible 30 Neighboring gene Pectin lyase-like superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Overexpression of CHMP7 from rapeseed and Arabidopsis causes dwarfism and premature senescence in Arabidopsis. Yang H, et al. J Plant Physiol, 2016 Oct 1. PMID 27497741
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001084859.1
    NM_116073.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within leaf senescence ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    involved_in vacuolar transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SNF7 family protein
    NP_001078328.1
    • SNF7 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); Has 1192 Blast hits to 1169 proteins in 233 species: Archae - 26; Bacteria - 65; Metazoa - 638; Fungi - 121; Plants - 165; Viruses - 1; Other Eukaryotes - 176 (source: NCBI BLink).
    NP_567125.1
    • SNF7 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      22986174..22988777
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001084859.1 → NP_001078328.1  SNF7 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078328.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4IX33, Q94CF1
      Conserved Domains (1) summary
      cl21588
      Location:261 → 395
      Snf7; Snf7

    2. NM_116073.3 → NP_567125.1  SNF7 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567125.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VEY3, A0A384LP67, Q94CF1, Q9M1R6
      Conserved Domains (1) summary
      cl21588
      Location:222 → 356
      Snf7
    Nucleotide Protein
    Heading Accession and Version

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