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    RNA-binding protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830426, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RNA-binding protein
    Primary source
    TAIR:AT5G05430
    Locus tag
    AT5G05430
    See related
    Araport:AT5G05430
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    K18I23.24; K18I23_24
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    6
    Sequence:
    Chromosome: 5; NC_003076.8 (1605275..1606712, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene LRR and NB-ARC domains-containing disease resistance protein Neighboring gene DRE-binding protein 2A Neighboring gene FKBP-like peptidyl-prolyl cis-trans isomerase family protein Neighboring gene ncRNA Neighboring gene Polyketide cyclase/dehydrase and lipid transport superfamily protein Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RNA-binding protein
    NP_196162.2
    • RNA-binding protein; BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G09160.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      1605275..1606712 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120625.2 → NP_196162.2  RNA-binding protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4JZB9, Q9FLB2

    2. NM_001342821.1 → NP_001330628.1  RNA-binding protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BBH0, A0A5S9Y2B7

    3. NM_001342822.1 → NP_001330629.1  RNA-binding protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BBD7, Q9FLB2
    Nucleotide Protein
    Heading Accession and Version

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