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    Putative endonuclease or glycosyl hydrolase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830844, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Putative endonuclease or glycosyl hydrolase
    Primary source
    TAIR:AT5G09840
    Locus tag
    AT5G09840
    See related
    Araport:AT5G09840
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MYH9.5; MYH9_5
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (3058907..3062190)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Plastid-lipid associated protein PAP / fibrillin family protein Neighboring gene BolA-like family protein Neighboring gene Transcription elongation factor (TFIIS) family protein Neighboring gene nuclear matrix protein-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Experimental analysis of the Arabidopsis mitochondrial proteome highlights signaling and regulatory components, provides assessment of targeting prediction programs, and indicates plant-specific mitochondrial proteins. Heazlewood JL, et al. Plant Cell, 2004 Jan. PMID 14671022, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_121021.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA nuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of gene expression IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion HDA PubMed 
    located_in peroxisome IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Putative endonuclease or glycosyl hydrolase
    NP_196546.1
    • Putative endonuclease or glycosyl hydrolase; BEST Arabidopsis thaliana protein match is: Putative endonuclease or glycosyl hydrolase (TAIR:AT5G64710.1); Has 416 Blast hits to 392 proteins in 63 species: Archae - 2; Bacteria - 5; Metazoa - 78; Fungi - 41; Plants - 277; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      3058907..3062190
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121021.3 → NP_196546.1  Putative endonuclease or glycosyl hydrolase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196546.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178URI8, A0A5S9Y358, Q9FIC2
      Conserved Domains (4) summary
      cd08824
      Location:740 → 798
      LOTUS; LOTUS is an uncharacterized small globular domain found in Limkain b1, Oskar and Tudor-containing proteins 5 and 7
      cd10910
      Location:72 → 195
      PIN_limkain_b1_N_like; N-terminal LabA-like PIN domain of limkain b1 and similar proteins
      pfam12872
      Location:290 → 347
      OST-HTH; OST-HTH/LOTUS domain
      pfam14418
      Location:618 → 693
      OHA; OST-HTH Associated domain
    Nucleotide Protein
    Heading Accession and Version

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