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    XTH5 xyloglucan endotransglucosylase/hydrolase 5 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831233, updated on 18-Sep-2024

    Summary

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    Official Symbol
    XTH5
    Official Full Name
    xyloglucan endotransglucosylase/hydrolase 5
    Primary source
    TAIR:AT5G13870
    Locus tag
    AT5G13870
    See related
    Araport:AT5G13870
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ENDOXYLOGLUCAN TRANSFERASE; endoxyloglucan transferase A4; EXGT-A4; MAC12.33; MAC12_33; xyloglucan endotransglucosylase/hydrolase 5
    Summary
    EXGT-A4, endoxyloglucan transferase
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    Genomic context

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    See XTH5 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (4474922..4477090, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene nascent polypeptide-associated complex subunit alpha-like protein 3 Neighboring gene ELCH-like protein Neighboring gene cotton fiber protein Neighboring gene plant viral-response family protein (DUF716) Neighboring gene microRNA ath-MIR848 precursor

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001343297.1
    NM_001343298.1
    NM_121390.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables polysaccharide binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables xyloglucan:xyloglucosyl transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in cell wall biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in xyloglucan metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    xyloglucan endotransglucosylase/hydrolase 5
    NP_196891.1
    • xyloglucan endotransglucosylase/hydrolase 5 (XTH5); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: endomembrane system, cell wall, apoplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Glycoside hydrolase, family 16 (InterPro:IPR000757), Glycoside hydrolase, family 16, active site (InterPro:IPR008263); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 4 (TAIR:AT2G06850.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      4474922..4477090 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121390.5 → NP_196891.1  xyloglucan endotransglucosylase/hydrolase 5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196891.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9XIW1
      UniProtKB/TrEMBL
      A0A178UI65, A0A384L761, Q67Z90
      Conserved Domains (1) summary
      cd02176
      Location:30 → 287
      GH16_XET; Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16

    2. NM_001343298.1 → NP_001331375.1  xyloglucan endotransglucosylase/hydrolase 5 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9XIW1
      UniProtKB/TrEMBL
      A0A178UI65, A0A384L761, Q67Z90
      Conserved Domains (1) summary
      cd02176
      Location:30 → 287
      GH16_XET; Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16

    3. NM_001343297.1 → NP_001331376.1  xyloglucan endotransglucosylase/hydrolase 5 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9XIW1
      UniProtKB/TrEMBL
      A0A178UI65, A0A384L761, Q67Z90
      Conserved Domains (1) summary
      cd02176
      Location:30 → 287
      GH16_XET; Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9XIW1.1

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