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    fanconi anemia group D2 protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827156, updated on 18-Sep-2024

    Summary

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    Official Full Name
    fanconi anemia group D2 protein
    Primary source
    TAIR:AT4G14970
    Locus tag
    AT4G14970
    See related
    Araport:AT4G14970
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DL3525W; FCAALL.148
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    31
    Sequence:
    Chromosome: 4; NC_003075.7 (8553643..8561664)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Tubulin/FtsZ family protein Neighboring gene membrane-associated progesterone binding protein 4 Neighboring gene Cysteine/Histidine-rich C1 domain family protein Neighboring gene Topoisomerase II-associated protein PAT1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis thaliana FANCD2 Promotes Meiotic Crossover Formation. Kurzbauer MT, et al. Plant Cell, 2018 Feb. PMID 29352063, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001340980.1
    NM_001340982.1
    NM_001340985.1

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in DNA repair IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within double-strand break repair involved in meiotic recombination IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within homologous chromosome pairing at meiosis IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within homologous chromosome pairing at meiosis IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within reciprocal meiotic recombination IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    fanconi anemia group D2 protein
    NP_001319941.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; Has 257 Blast hits to 164 proteins in 70 species: Archae - 0; Bacteria - 4; Metazoa - 189; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      8553643..8561664
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001340981.1 → NP_001328522.1  fanconi anemia group D2 protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UXR5, A0A1P8B4X0

    2. NM_001340983.1 → NP_001328524.1  fanconi anemia group D2 protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UXR5, A0A1P8B4Y0

    3. NM_001340984.1 → NP_001328525.1  fanconi anemia group D2 protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UXR5, A0A1P8B4Z2

    4. NM_001340980.1 → NP_001319941.1  fanconi anemia group D2 protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UXR5, F4JIJ1

    5. NM_001340982.1 → NP_001328523.1  fanconi anemia group D2 protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UXR5, A0A1P8B4W8
      Conserved Domains (1) summary
      cl17018
      Location:95 → 1447
      FANC; Fanconi anemia ID complex proteins FANCI and FANCD2

    6. NM_001340985.1 → NP_001328521.1  fanconi anemia group D2 protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UXR5, A0A1P8B4W1
    Nucleotide Protein
    Heading Accession and Version

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