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    ATG8D Ubiquitin-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 815112, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ATG8D
    Official Full Name
    Ubiquitin-like superfamily protein
    Primary source
    TAIR:AT2G05630
    Locus tag
    AT2G05630
    See related
    Araport:AT2G05630
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T20G20.2; T20G20_2
    Summary
    in the Arabidopsis autophagy pathway
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    Genomic context

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    See ATG8D in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    7
    Sequence:
    Chromosome: 2; NC_003071.7 (2082894..2084905, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene proton gradient regulation 5 Neighboring gene uncharacterized protein Neighboring gene DNA repair DEAD helicase RAD3/XP-D subfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The phosphatidylinositol 3-phosphate effector FYVE3 regulates FYVE2-dependent autophagy in Arabidopsis thaliana. Kim JH, et al. Front Plant Sci, 2023. PMID 37008475, Free PMC Article
    2. Plant NBR1 is a selective autophagy substrate and a functional hybrid of the mammalian autophagic adapters NBR1 and p62/SQSTM1. Svenning S, et al. Autophagy, 2011 Sep. PMID 21606687, Free PMC Article
    3. Processing of ATG8s, ubiquitin-like proteins, and their deconjugation by ATG4s are essential for plant autophagy. Yoshimoto K, et al. Plant Cell, 2004 Nov. PMID 15494556, Free PMC Article
    4. Uncovering Arabidopsis membrane protein interactome enriched in transporters using mating-based split ubiquitin assays and classification models. Chen J, et al. Front Plant Sci, 2012. PMID 22737156, Free PMC Article
    5. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001161025.1
    NM_126586.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in autophagosome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Ubiquitin-like superfamily protein
    NP_001154497.1
    • ATG8D; FUNCTIONS IN: microtubule binding; INVOLVED IN: autophagy; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Light chain 3 (LC3) (InterPro:IPR004241); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT1G62040.2); Has 1504 Blast hits to 1502 proteins in 268 species: Archae - 0; Bacteria - 0; Metazoa - 717; Fungi - 172; Plants - 303; Viruses - 3; Other Eukaryotes - 309 (source: NCBI BLink).
    NP_178631.1
    • ATG8D; CONTAINS InterPro DOMAIN/s: Light chain 3 (LC3) (InterPro:IPR004241); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT1G62040.2); Has 1524 Blast hits to 1522 proteins in 273 species: Archae - 0; Bacteria - 0; Metazoa - 726; Fungi - 178; Plants - 302; Viruses - 3; Other Eukaryotes - 315 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      2082894..2084905 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_126586.4 → NP_178631.1  Ubiquitin-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_178631.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LBA9, Q9SL04
      UniProtKB/TrEMBL
      A0A178VRR4, A0A5S9WXE6, A0A654ES40
      Conserved Domains (1) summary
      cd16128
      Location:12 → 114
      Ubl_ATG8; ubiquitin-like (Ubl) domain found in Saccharomyces cerevisiae Atg8p and related proteins; sub-family of the autophagy-related 8 (ATG8) family

    2. NM_001161025.1 → NP_001154497.1  Ubiquitin-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154497.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4IHC1
      Conserved Domains (1) summary
      cd01611
      Location:55 → 161
      GABARAP; Ubiquitin domain of GABA-receptor-associated protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SL04.1

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