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    Rubredoxin-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841892, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Rubredoxin-like superfamily protein
    Primary source
    TAIR:AT1G54500
    Locus tag
    AT1G54500
    See related
    Araport:AT1G54500
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F20D21.31; F20D21_31
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (20356954..20357879, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene LRR receptor-like Serine/Threonine-kinase Neighboring gene exoribonuclease 4 Neighboring gene NIMA-related serine/threonine kinase 1 Neighboring gene myelin-associated oligodendrocyte basic protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A conserved rubredoxin is necessary for photosystem II accumulation in diverse oxygenic photoautotrophs. Calderon RH, et al. J Biol Chem, 2013 Sep 13. PMID 23900844, Free PMC Article
    2. In-depth analysis of the thylakoid membrane proteome of Arabidopsis thaliana chloroplasts: new proteins, new functions, and a plastid proteome database. Friso G, et al. Plant Cell, 2004 Feb. PMID 14729914, Free PMC Article
    3. New functions of the thylakoid membrane proteome of Arabidopsis thaliana revealed by a simple, fast, and versatile fractionation strategy. Peltier JB, et al. J Biol Chem, 2004 Nov 19. PMID 15322131
    4. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    5. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_104328.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables iron ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within photosystem II assembly IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within photosystem II assembly IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast thylakoid membrane HDA PubMed 
    located_in nucleus HDA PubMed 

    General protein information

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    Preferred Names
    Rubredoxin-like superfamily protein
    NP_175852.1
    • Rubredoxin-like superfamily protein; FUNCTIONS IN: electron carrier activity, metal ion binding; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rubredoxin, iron-binding site (InterPro:IPR018527), Rubredoxin-type Fe(Cys)4 protein (InterPro:IPR004039); Has 3108 Blast hits to 3080 proteins in 1023 species: Archae - 186; Bacteria - 2587; Metazoa - 0; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 283 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      20356954..20357879 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104328.4 → NP_175852.1  Rubredoxin-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175852.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W6Q7, Q9SLI4
      Conserved Domains (2) summary
      PRK05452
      Location:50 → 156
      PRK05452; anaerobic nitric oxide reductase flavorubredoxin; Provisional
      cd00730
      Location:100 → 146
      rubredoxin; Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are ...
    Nucleotide Protein
    Heading Accession and Version

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