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    CASC3/Barentsz eIF4AIII binding protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838095, updated on 18-Sep-2024

    Summary

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    Official Full Name
    CASC3/Barentsz eIF4AIII binding protein
    Primary source
    TAIR:AT1G15280
    Locus tag
    AT1G15280
    See related
    Araport:AT1G15280
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F9L1.22; F9L1_22
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    11
    Sequence:
    Chromosome: 1; NC_003070.9 (5252285..5256863)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene LOW protein: ATP-dependent RNA helicase-like protein Neighboring gene Translation machinery associated TMA7 Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Dynamic behavior of Arabidopsis eIF4A-III, putative core protein of exon junction complex: fast relocation to nucleolus and splicing speckles under hypoxia. Koroleva OA, et al. Plant Cell, 2009 May. PMID 19435936, Free PMC Article
    2. In Planta Determination of the mRNA-Binding Proteome of Arabidopsis Etiolated Seedlings. Reichel M, et al. Plant Cell, 2016 Oct. PMID 27729395, Free PMC Article
    3. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
    4. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_101397.5
    NM_180613.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding HDA PubMed 
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of exon-exon junction complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    CASC3/Barentsz eIF4AIII binding protein
    NP_172980.3
    • CASC3/Barentsz eIF4AIII binding; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CASC3/Barentsz eIF4AIII binding (InterPro:IPR018545); BEST Arabidopsis thaliana protein match is: CASC3/Barentsz eIF4AIII binding (TAIR:AT1G80000.2); Has 4051 Blast hits to 2285 proteins in 311 species: Archae - 2; Bacteria - 232; Metazoa - 1228; Fungi - 302; Plants - 228; Viruses - 67; Other Eukaryotes - 1992 (source: NCBI BLink).
    NP_850944.1
    • CASC3/Barentsz eIF4AIII binding; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CASC3/Barentsz eIF4AIII binding (InterPro:IPR018545); BEST Arabidopsis thaliana protein match is: CASC3/Barentsz eIF4AIII binding (TAIR:AT1G80000.2); Has 4070 Blast hits to 2291 proteins in 306 species: Archae - 2; Bacteria - 223; Metazoa - 1249; Fungi - 308; Plants - 219; Viruses - 71; Other Eukaryotes - 1998 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      5252285..5256863
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101397.5 → NP_172980.3  CASC3/Barentsz eIF4AIII binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172980.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8H1F3, Q8RXP2
      Conserved Domains (1) summary
      smart01044
      Location:78 → 170
      Btz; CASC3/Barentsz eIF4AIII binding

    2. NM_180613.2 → NP_850944.1  CASC3/Barentsz eIF4AIII binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850944.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4HZK3, Q8RXP2
      Conserved Domains (1) summary
      cl09653
      Location:78 → 167
      Btz; CASC3/Barentsz eIF4AIII binding
    Nucleotide Protein
    Heading Accession and Version

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