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    LPA19 photosystem II 11 kDa protein-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837040, updated on 18-Sep-2024

    Summary

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    Official Symbol
    LPA19
    Official Full Name
    photosystem II 11 kDa protein-like protein
    Primary source
    TAIR:AT1G05385
    Locus tag
    AT1G05385
    See related
    Araport:AT1G05385
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    LOW PSII ACCUMULATION 19; Psb27-H1
    Summary
    Encodes a Psb27 homolog involved in photosystem II biogenesis.
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    Genomic context

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    See LPA19 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (1582671..1583760, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene vacuole membrane-like protein Neighboring gene Sec14p-like phosphatidylinositol transfer family protein Neighboring gene Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein Neighboring gene tRNA-Asn Neighboring gene uncharacterized protein Neighboring gene CDPK adapter, putative (DUF1423)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. LPA19, a Psb27 homolog in Arabidopsis thaliana, facilitates D1 protein precursor processing during PSII biogenesis. Wei L, et al. J Biol Chem, 2010 Jul 9. PMID 20444695, Free PMC Article
    2. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
    3. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001331547.1
    NM_100418.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in photosystem II assembly IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within photosystem II assembly IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in photosystem II repair IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast thylakoid lumen IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytosol HDA PubMed 
    part_of photosystem II IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    photosystem II 11 kDa protein-like protein
    NP_563737.1
    • LOW PSII ACCUMULATION 19 (LPA19); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosystem II assembly; LOCATED IN: chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 214 Blast hits to 214 proteins in 55 species: Archae - 0; Bacteria - 73; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      1582671..1583760 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100418.3 → NP_563737.1  photosystem II 11 kDa protein-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563737.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GXE0, Q9ZVZ9
      UniProtKB/TrEMBL
      A0A178WJM6, A0A5S9SQ39, A0A7G2DNL1
      Conserved Domains (1) summary
      PLN00061
      Location:52 → 196
      PLN00061; photosystem II protein Psb27; Provisional

    2. NM_001331547.1 → NP_001322108.1  photosystem II 11 kDa protein-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8ASY3
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9ZVZ9.1

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