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    ER membrane protein, putative (DUF962) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838454, updated on 18-Sep-2024

    Summary

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    Official Full Name
    ER membrane protein, putative (DUF962)
    Primary source
    TAIR:AT1G18720
    Locus tag
    AT1G18720
    See related
    Araport:AT1G18720
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F6A14.17; F6A14_17
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (6457775..6460405, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene myb domain protein 47 Neighboring gene NDH dependent flow 6 Neighboring gene ncRNA Neighboring gene ROH1, putative (DUF793)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. MHP1 and MHL generate odd-chain fatty acids from 2-hydroxy fatty acids in sphingolipids and are related to immunity in Arabidopsis thaliana. Ushio M, et al. Plant Sci, 2023 Nov. PMID 37619867
    2. Arabidopsis MHP1, a homologue of yeast Mpo1, is involved in ABA signaling. Zheng M, et al. Plant Sci, 2021 Mar. PMID 33568285
    3. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    4. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    5. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_101730.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables fatty acid alpha-dioxygenase activity IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within abscisic acid-activated signaling pathway IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in sphingolipid catabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in endoplasmic reticulum IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus HDA PubMed 

    General protein information

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    Preferred Names
    ER membrane protein, putative (DUF962)
    NP_564061.1
    • Protein of unknown function (DUF962); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF962 (InterPro:IPR009305); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF962) (TAIR:AT1G74440.1); Has 638 Blast hits to 636 proteins in 299 species: Archae - 0; Bacteria - 335; Metazoa - 3; Fungi - 143; Plants - 88; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      6457775..6460405 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001332364.1 → NP_001320317.1  ER membrane protein, putative (DUF962) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W9W7, A0A384L285, Q9M9U3
      Conserved Domains (1) summary
      cl01879
      Location:7 → 203
      DUF962; Protein of unknown function (DUF962)

    2. NM_101730.4 → NP_564061.1  ER membrane protein, putative (DUF962) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564061.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W9W7, A0A384L285, Q9M9U3
      Conserved Domains (1) summary
      cl01879
      Location:7 → 203
      DUF962; Protein of unknown function (DUF962)
    Nucleotide Protein
    Heading Accession and Version

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