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    HSFA1D heat shock transcription factor A1D [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 840125, updated on 18-Sep-2024

    Summary

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    Official Symbol
    HSFA1D
    Official Full Name
    heat shock transcription factor A1D
    Primary source
    TAIR:AT1G32330
    Locus tag
    AT1G32330
    See related
    Araport:AT1G32330
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATHSFA1D; F27G20.6; heat shock transcription factor A1D
    Summary
    Member of Heat Stress Transcription Factor (Hsf) family. Negatively regulated by HSP90.2.
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    Genomic context

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    See HSFA1D in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (11656964..11660471, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene valine-tRNA ligase Neighboring gene MAP kinase kinase 10 Neighboring gene uncharacterized protein Neighboring gene NDR1/HIN1-like 8

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Cytosolic heat shock protein 90 regulates heat shock transcription factor in Arabidopsis thaliana. Yamada K, et al. Plant Signal Behav, 2008 Sep. PMID 19704818, Free PMC Article
    2. HsfA1d and HsfA1e involved in the transcriptional regulation of HsfA2 function as key regulators for the Hsf signaling network in response to environmental stress. Nishizawa-Yokoi A, et al. Plant Cell Physiol, 2011 May. PMID 21471117
    3. Functional characterization of AtHsp90.3 in Saccharomyces cerevisiae and Arabidopsis thaliana under heat stress. Xu X, et al. Biotechnol Lett, 2010 Jul. PMID 20229063
    4. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
    5. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. These findings indicated that HsfA1d and HsfA1e not only regulate HsfA2 expression but also function as key regulators of the Hsf signaling network in response to environmental stress.
      Title: HsfA1d and HsfA1e involved in the transcriptional regulation of HsfA2 function as key regulators for the Hsf signaling network in response to environmental stress.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001333004.1
    NM_102966.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within response to heat IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    heat shock transcription factor A1D
    NP_174511.2
    • heat shock transcription factor A1D (HSFA1D); FUNCTIONS IN: protein binding, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to heat; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: heat shock factor 1 (TAIR:AT4G17750.1); Has 2363 Blast hits to 2344 proteins in 251 species: Archae - 0; Bacteria - 10; Metazoa - 417; Fungi - 488; Plants - 855; Viruses - 2; Other Eukaryotes - 591 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      11656964..11660471 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102966.4 → NP_174511.2  heat shock transcription factor A1D [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_174511.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GXS5, Q9LQM7
      UniProtKB/TrEMBL
      A0A178WGY5, A0A5S9WI14, A0A7G2DY14
      Conserved Domains (2) summary
      smart00502
      Location:138 → 221
      BBC; B-Box C-terminal domain
      smart00415
      Location:35 → 127
      HSF; heat shock factor

    2. NM_001333004.1 → NP_001321152.1  heat shock transcription factor A1D [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WGY5, A0A1P8AQ04, A0A5S9WI14, A0A654EFH3
      Conserved Domains (2) summary
      smart00502
      Location:138 → 221
      BBC; B-Box C-terminal domain
      smart00415
      Location:35 → 127
      HSF; heat shock factor
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LQM7.2

    Gene LinkOut

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