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    RAD3-like DNA-binding helicase protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 844328, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RAD3-like DNA-binding helicase protein
    Primary source
    TAIR:AT1G79890
    Locus tag
    AT1G79890
    See related
    Araport:AT1G79890
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F19K16.15; F19K16_15
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    9
    Sequence:
    Chromosome: 1; NC_003070.9 (30048519..30052203)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene RHO guanyl-nucleotide exchange factor 12 Neighboring gene D-isomer specific 2-hydroxyacid dehydrogenase family protein Neighboring gene RNA recognition motif (RRM)-containing protein Neighboring gene Mitochondrial substrate carrier family protein Neighboring gene Regulator of Vps4 activity in the MVB pathway protein Neighboring gene Putative methyltransferase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
    2. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001334931.1
    NM_001334932.1
    NM_001334933.1
    NM_106638.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in nucleobase-containing compound metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytosol HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RAD3-like DNA-binding helicase protein
    NP_178107.1
    • RAD3-like DNA-binding helicase protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD2 (InterPro:IPR010614), DEAD-like helicase, N-terminal (InterPro:IPR014001), Helicase, superfamily 1/2, ATP-binding domain, DinG/Rad3-type (InterPro:IPR014013), DNA helicase (DNA repair), Rad3 type (InterPro:IPR013020), Helicase, ATP-dependent, c2 type (InterPro:IPR006555); BEST Arabidopsis thaliana protein match is: RAD3-like DNA-binding helicase protein (TAIR:AT1G79950.1); Has 2489 Blast hits to 1811 proteins in 412 species: Archae - 187; Bacteria - 188; Metazoa - 839; Fungi - 373; Plants - 265; Viruses - 5; Other Eukaryotes - 632 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      30048519..30052203
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106638.2 → NP_178107.1  RAD3-like DNA-binding helicase protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_178107.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WL33, A0A5S9WVV7, Q9CA92
      Conserved Domains (3) summary
      COG1199
      Location:1 → 846
      DinG; Rad3-related DNA helicase [Replication, recombination and repair]
      pfam06733
      Location:187 → 375
      DEAD_2; DEAD_2
      pfam13307
      Location:636 → 849
      Helicase_C_2; Helicase C-terminal domain

    2. NM_001334931.1 → NP_001321115.1  RAD3-like DNA-binding helicase protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WL33, A0A1P8APW6, A0A5S9WVV7

    3. NM_001334932.1 → NP_001321114.1  RAD3-like DNA-binding helicase protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8APW8, A0A654ES47

    4. NM_001334933.1 → NP_001321113.1  RAD3-like DNA-binding helicase protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8APX9
    Nucleotide Protein
    Heading Accession and Version

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