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    LMBR1-like membrane protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820042, updated on 18-Sep-2024

    Summary

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    Official Full Name
    LMBR1-like membrane protein
    Primary source
    TAIR:AT3G08930
    Locus tag
    AT3G08930
    See related
    Araport:AT3G08930
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    14
    Sequence:
    Chromosome: 3; NC_003074.8 (2713312..2717366)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene reversibly glycosylated polypeptide 3 Neighboring gene ncRNA Neighboring gene DNAJ heat shock family protein Neighboring gene Rhodanese/Cell cycle control phosphatase superfamily protein Neighboring gene light harvesting complex photosystem II Neighboring gene ARM repeat superfamily protein Neighboring gene ARM repeat superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
    2. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    3. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_111727.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytosol HDA PubMed 
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasmodesma HDA PubMed 

    General protein information

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    Preferred Names
    LMBR1-like membrane protein
    NP_566338.2
    • LMBR1-like membrane protein; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: LMBR1-like membrane protein, conserved region (InterPro:IPR006876); BEST Arabidopsis thaliana protein match is: LMBR1-like membrane protein (TAIR:AT5G01460.1); Has 384 Blast hits to 384 proteins in 132 species: Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 85; Plants - 80; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      2713312..2717366
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111727.6 → NP_566338.2  LMBR1-like membrane protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566338.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q3EBA5, Q94C82, Q9SR93
      UniProtKB/TrEMBL
      A0A178VG32, A0A5S9XAK3
      Conserved Domains (1) summary
      pfam04791
      Location:23 → 488
      LMBR1; LMBR1-like membrane protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SR93.2

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