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    HGL1 heteroglycan glucosidase 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821944, updated on 18-Sep-2024

    Summary

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    Official Symbol
    HGL1
    Official Full Name
    heteroglycan glucosidase 1
    Primary source
    TAIR:AT3G23640
    Locus tag
    AT3G23640
    See related
    Araport:AT3G23640
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    heteroglycan glucosidase 1
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    Genomic context

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    See HGL1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    23
    Sequence:
    Chromosome: 3; NC_003074.8 (8501556..8509649)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ROTUNDIFOLIA like 13 Neighboring gene DVL family protein Neighboring gene miscRNA Neighboring gene kinase-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of Feronia-interacting proteins in Arabidopsis thaliana. Choi JH, et al. Genes Genomics, 2022 Dec. PMID 36053485
    2. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001125213.2
    NM_001338653.1
    NM_113268.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    heteroglycan glucosidase 1
    NP_001118685.1
    • heteroglycan glucosidase 1 (HGL1); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 31 (InterPro:IPR000322), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolases family 31 protein (TAIR:AT5G63840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_566736.1
    • heteroglycan glucosidase 1 (HGL1); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 31 (InterPro:IPR000322), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolases family 31 protein (TAIR:AT5G63840.1); Has 5349 Blast hits to 5021 proteins in 1110 species: Archae - 88; Bacteria - 3100; Metazoa - 761; Fungi - 803; Plants - 278; Viruses - 0; Other Eukaryotes - 319 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      8501556..8509649
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001125213.2 → NP_001118685.1  heteroglycan glucosidase 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001118685.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2EMZ9, Q93Y12
      Conserved Domains (1) summary
      PLN02763
      Location:13 → 990
      PLN02763; hydrolase, hydrolyzing O-glycosyl compounds

    2. NM_001338653.1 → NP_001327915.1  heteroglycan glucosidase 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LTS6, A0A5S9XFI3, A0A654FA13
      Conserved Domains (1) summary
      PLN02763
      Location:82 → 1059
      PLN02763; hydrolase, hydrolyzing O-glycosyl compounds

    3. NM_113268.3 → NP_566736.1  heteroglycan glucosidase 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566736.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2EMZ9, Q93Y12
      Conserved Domains (1) summary
      PLN02763
      Location:13 → 990
      PLN02763; hydrolase, hydrolyzing O-glycosyl compounds
    Nucleotide Protein
    Heading Accession and Version

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