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    UCL1 ascorbic acid mannose pathway regulator (DUF295) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842885, updated on 18-Sep-2024

    Summary

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    Official Symbol
    UCL1
    Official Full Name
    ascorbic acid mannose pathway regulator (DUF295)
    Primary source
    TAIR:AT1G65740
    Locus tag
    AT1G65740
    See related
    Araport:AT1G65740
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F1E22.11; F1E22_11; UPWARD CURLY LEAF1
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    Genomic context

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    See UCL1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (24452096..24453211, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ascorbic acid mannose pathway regulator Neighboring gene ncRNA Neighboring gene pseudo Neighboring gene ascorbic acid mannose pathway regulator (DUF295)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Control of Paternally Expressed Imprinted UPWARD CURLY LEAF1, a Gene Encoding an F-Box Protein That Regulates CURLY LEAF Polycomb Protein, in the Arabidopsis Endosperm. Jeong CW, et al. PLoS One, 2015. PMID 25689861, Free PMC Article
    2. An E3 ligase complex regulates SET-domain polycomb group protein activity in Arabidopsis thaliana. Jeong CW, et al. Proc Natl Acad Sci U S A, 2011 May 10. PMID 21518870, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. UPWARD CURLY LEAF1 (UCL1), a gene encoding an E3 ligase that degrades the CURLY LEAF (CLF) polycomb protein, is a paternally expressed imprinted gene(PEG). [UCL1]
      Title: Control of Paternally Expressed Imprinted UPWARD CURLY LEAF1, a Gene Encoding an F-Box Protein That Regulates CURLY LEAF Polycomb Protein, in the Arabidopsis Endosperm.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    ascorbic acid mannose pathway regulator (DUF295)
    NP_176751.1
    • Protein of unknown function (DUF295); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF295) (TAIR:AT1G65760.1); Has 192 Blast hits to 188 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 192; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      24452096..24453211 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105248.1 → NP_176751.1  ascorbic acid mannose pathway regulator (DUF295) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176751.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IBK1, Q9SHY1
      UniProtKB/TrEMBL
      A0A178WKU7, A0A654ERF5
      Conserved Domains (1) summary
      PLN03215
      Location:1 → 371
      PLN03215; ascorbic acid mannose pathway regulator 1; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SHY1.2

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