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    Transmembrane amino acid transporter family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822740, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Transmembrane amino acid transporter family protein
    Primary source
    TAIR:AT3G30390
    Locus tag
    AT3G30390
    See related
    Araport:AT3G30390
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Summary
    Encodes a putative amino acid transporter.
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    7
    Sequence:
    Chromosome: 3; NC_003074.8 (11976837..11979646, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene MuDR family transposase Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene miscRNA Neighboring gene inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (DUF784)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Uncovering Arabidopsis membrane protein interactome enriched in transporters using mating-based split ubiquitin assays and classification models. Chen J, et al. Front Plant Sci, 2012. PMID 22737156, Free PMC Article
    2. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article
    3. A proteomics dissection of Arabidopsis thaliana vacuoles isolated from cell culture. Jaquinod M, et al. Mol Cell Proteomics, 2007 Mar. PMID 17151019, Free PMC Article
    4. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001035718.1
    NM_001339051.1
    NM_113938.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables amino acid transmembrane transporter activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    located_in plant-type vacuole HDA PubMed 
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Transmembrane amino acid transporter family protein
    NP_001319669.1
    • Transmembrane amino acid transporter family protein; FUNCTIONS IN: amino acid transmembrane transporter activity; INVOLVED IN: amino acid transport; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT5G38820.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_566854.1
    • Transmembrane amino acid transporter family protein; FUNCTIONS IN: amino acid transmembrane transporter activity; INVOLVED IN: amino acid transport; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT5G38820.1); Has 4285 Blast hits to 4220 proteins in 397 species: Archae - 8; Bacteria - 394; Metazoa - 1411; Fungi - 683; Plants - 986; Viruses - 5; Other Eukaryotes - 798 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      11976837..11979646 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113938.3 → NP_566854.1  Transmembrane amino acid transporter family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566854.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DH87, Q9LI61
      UniProtKB/TrEMBL
      A0A654FDC4, A0A7G2EQR5
      Conserved Domains (1) summary
      cl00456
      Location:42 → 447
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

    2. NM_001339051.1 → NP_001319669.1  Transmembrane amino acid transporter family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DH87, Q9LI61
      UniProtKB/TrEMBL
      A0A654FDC4, A0A7G2EQR5
      Conserved Domains (1) summary
      cl00456
      Location:42 → 447
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

    3. NM_001035718.1 → NP_001030795.1  Transmembrane amino acid transporter family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001030795.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DH87, Q9LI61
      UniProtKB/TrEMBL
      A0A654FDC4, A0A7G2EQR5
      Conserved Domains (1) summary
      cl00456
      Location:42 → 447
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LI61.1

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