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    Dormancy/auxin associated family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842075, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Dormancy/auxin associated family protein
    Primary source
    TAIR:AT1G56220
    Locus tag
    AT1G56220
    See related
    Araport:AT1G56220
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F14G9.17; F14G9_17
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (21042951..21044998)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene embryo defective 1303 Neighboring gene Heavy metal transport/detoxification superfamily protein Neighboring gene uncharacterized protein Neighboring gene enolase (DUF1399) Neighboring gene Protein of unknown function (PD694200)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. LIK1, a CERK1-interacting kinase, regulates plant immune responses in Arabidopsis. Le MH, et al. PLoS One, 2014. PMID 25036661, Free PMC Article
    2. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001333769.1
    NM_001333770.1
    NM_104501.4
    NM_179488.1
    NM_179489.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Dormancy/auxin associated family protein
    NP_001319252.1
    • Dormancy/auxin associated family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dormancyauxin associated (InterPro:IPR008406); BEST Arabidopsis thaliana protein match is: Dormancy/auxin associated family protein (TAIR:AT1G54070.1); Has 192 Blast hits to 192 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 191; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
    NP_564714.1
    • Dormancy/auxin associated family protein; CONTAINS InterPro DOMAIN/s: Dormancyauxin associated (InterPro:IPR008406); BEST Arabidopsis thaliana protein match is: Dormancy/auxin associated family protein (TAIR:AT1G54070.1); Has 196 Blast hits to 195 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 194; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
    NP_849819.1
    • Dormancy/auxin associated family protein; CONTAINS InterPro DOMAIN/s: Dormancyauxin associated (InterPro:IPR008406); BEST Arabidopsis thaliana protein match is: Dormancy/auxin associated family protein (TAIR:AT1G54070.1); Has 192 Blast hits to 192 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 191; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
    NP_849820.2
    • Dormancy/auxin associated family protein; CONTAINS InterPro DOMAIN/s: Dormancyauxin associated (InterPro:IPR008406); BEST Arabidopsis thaliana protein match is: Dormancy/auxin associated family protein (TAIR:AT1G54070.1); Has 195 Blast hits to 194 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 194; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      21042951..21044998
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001333769.1 → NP_001319252.1  Dormancy/auxin associated family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WNJ9, A0A2H1ZEE5
      Conserved Domains (1) summary
      pfam05564
      Location:32 → 87
      Auxin_repressed; Dormancy/auxin associated protein

    2. NM_001333770.1 → NP_001322032.1  Dormancy/auxin associated family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8ASR5, A0A7G2E194
      Conserved Domains (1) summary
      pfam05564
      Location:32 → 87
      Auxin_repressed; Dormancy/auxin associated protein

    3. NM_179489.2 → NP_849820.2  Dormancy/auxin associated family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A2H1ZEE3, A0A7G2E194

    4. NM_104501.4 → NP_564714.1  Dormancy/auxin associated family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564714.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A8MSC4, F4I3L7, Q8H0W7, Q8LD26, Q9C7J7
      UniProtKB/TrEMBL
      A0A178WNF8, A0A178WNI6, A0A5S9WMD0
      Conserved Domains (1) summary
      pfam05564
      Location:7 → 62
      Auxin_repressed; Dormancy/auxin associated protein

    5. NM_179488.1 → NP_849819.1  Dormancy/auxin associated family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849819.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WNJ9
      Conserved Domains (1) summary
      pfam05564
      Location:7 → 83
      Auxin_repressed; Dormancy/auxin associated protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8LD26.1

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