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    cadherin EGF LAG seven-pass G-type receptor, putative (DUF3527) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817899, updated on 18-Sep-2024

    Summary

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    Official Full Name
    cadherin EGF LAG seven-pass G-type receptor, putative (DUF3527)
    Primary source
    TAIR:AT2G33360
    Locus tag
    AT2G33360
    See related
    Araport:AT2G33360
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F4P9.13; F4P9_13
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    3
    Sequence:
    Chromosome: 2; NC_003071.7 (14139760..14143118)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene MOS4-associated complex 3B Neighboring gene CCT motif family protein Neighboring gene Ribosomal protein L14p/L23e family protein Neighboring gene Caleosin-related family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Large-scale characterization of integral proteins from Arabidopsis vacuolar membrane by two-dimensional liquid chromatography. Szponarski W, et al. Proteomics, 2004 Feb. PMID 14760709
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001084531.1
    NM_128896.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in vacuole HDA PubMed 

    General protein information

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    Preferred Names
    cadherin EGF LAG seven-pass G-type receptor, putative (DUF3527)
    NP_001078000.1
    • Protein of unknown function (DUF3527); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3527 (InterPro:IPR021916); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3527) (TAIR:AT1G04490.2); Has 132 Blast hits to 119 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 132; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_180894.1
    • Protein of unknown function (DUF3527); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3527 (InterPro:IPR021916); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3527) (TAIR:AT1G04490.2); Has 134 Blast hits to 133 proteins in 22 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 2; Plants - 120; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      14139760..14143118
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128896.6 → NP_180894.1  cadherin EGF LAG seven-pass G-type receptor, putative (DUF3527) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180894.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9X3H8, A0A654F933, O22787
      Conserved Domains (1) summary
      pfam12043
      Location:256 → 588
      DUF3527; Domain of unknown function (DUF3527)

    2. NM_001084531.1 → NP_001078000.1  cadherin EGF LAG seven-pass G-type receptor, putative (DUF3527) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078000.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4IVT6
      Conserved Domains (1) summary
      pfam12043
      Location:100 → 433
      DUF3527; Domain of unknown function (DUF3527)
    Nucleotide Protein
    Heading Accession and Version

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