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    CTP synthase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828137, updated on 18-Sep-2024

    Summary

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    Official Full Name
    CTP synthase family protein
    Primary source
    TAIR:AT4G02120
    Locus tag
    AT4G02120
    See related
    Araport:AT4G02120
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T10M13.13; T10M13_13
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    20
    Sequence:
    Chromosome: 4; NC_003075.7 (940721..944327)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Heat shock protein DnaJ with tetratricopeptide repeat-containing protein Neighboring gene transcription coactivator Neighboring gene galacturonosyltransferase 6 Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene ARM repeat superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of filament-forming CTP synthases from Arabidopsis thaliana. Daumann M, et al. Plant J, 2018 Oct. PMID 30030857, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001340363.1
    NM_001340364.1
    NM_001340365.1
    NM_116444.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables CTP synthase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables CTP synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in 'de novo' CTP biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoophidium IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    CTP synthase family protein
    NP_192121.2
    • CTP synthase family protein; FUNCTIONS IN: CTP synthase activity, catalytic activity; INVOLVED IN: pyrimidine ribonucleotide metabolic process, pyrimidine nucleotide biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), CTP synthase (InterPro:IPR004468), CTP synthase, N-terminal (InterPro:IPR017456), Glutamine amidotransferase type 1 (InterPro:IPR017926); BEST Arabidopsis thaliana protein match is: CTP synthase family protein (TAIR:AT3G12670.1); Has 10891 Blast hits to 10859 proteins in 2938 species: Archae - 237; Bacteria - 5545; Metazoa - 255; Fungi - 228; Plants - 170; Viruses - 0; Other Eukaryotes - 4456 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      940721..944327
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001340362.1 → NP_001329021.1  CTP synthase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UX17, A0A1P8B6F9

    2. NM_116444.4 → NP_192121.2  CTP synthase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_192121.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UVT8, A0A178UX17, Q8L6Z9
      Conserved Domains (1) summary
      PLN02327
      Location:1 → 556
      PLN02327; CTP synthase

    3. NM_001340363.1 → NP_001329022.1  CTP synthase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UX17, A0A1P8B6F8

    4. NM_001340364.1 → NP_001329019.1  CTP synthase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UX17, A0A1P8B6G0, A0A5S9XPY6

    5. NM_001340365.1 → NP_001329020.1  CTP synthase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B6G6, O04252
    Nucleotide Protein
    Heading Accession and Version

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