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    Cavin4 caveolae associated 4 [ Mus musculus (house mouse) ]

    Gene ID: 68016, updated on 27-Nov-2024

    Summary

    Official Symbol
    Cavin4provided by MGI
    Official Full Name
    caveolae associated 4provided by MGI
    Primary source
    MGI:MGI:1915266
    See related
    Ensembl:ENSMUSG00000028348 AllianceGenome:MGI:1915266
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Murc; 2310039E09Rik
    Summary
    Predicted to enable GTPase activator activity. Acts upstream of or within positive regulation of transcription by RNA polymerase II. Located in Z disc; caveola; and sarcoplasm. Is expressed in cardiovascular system; lung; and skeletal muscle. Orthologous to human CAVIN4 (caveolae associated protein 4). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in heart adult (RPKM 11.9), CNS E11.5 (RPKM 1.8) and 5 other tissues See more
    Orthologs
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    Genomic context

    See Cavin4 in Genome Data Viewer
    Location:
    4 B1; 4 26.23 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (48663514..48673492)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (48663514..48673492)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene Myb/SANT-like DNA-binding domain containing 3 Neighboring gene STARR-seq mESC enhancer starr_10167 Neighboring gene transmembrane protein with EGF-like and two follistatin-like domains 1 Neighboring gene STARR-seq mESC enhancer starr_10171 Neighboring gene predicted gene 12439 Neighboring gene STARR-seq mESC enhancer starr_10174 Neighboring gene predicted gene, 52718 Neighboring gene STARR-seq mESC enhancer starr_10175 Neighboring gene STARR-seq mESC enhancer starr_10176

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 
    • Targeted (2)  1 citation

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Clone Names

    • MGC107637

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables GTPase activator activity ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in Z disc IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in Z disc ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    is_active_in caveola IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in caveola IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in caveola ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
     
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in sarcolemma IEA
    Inferred from Electronic Annotation
    more info
     
    located_in sarcoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    caveolae-associated protein 4
    Names
    cavin 4
    muscle-related coiled-coil protein
    muscle-restricted coiled-coil protein

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_026509.4NP_080785.2  caveolae-associated protein 4

      See identical proteins and their annotated locations for NP_080785.2

      Status: VALIDATED

      Source sequence(s)
      AL807771
      Consensus CDS
      CCDS18169.2
      UniProtKB/Swiss-Prot
      A2AMM0, B1PRL4, Q5FW67, Q9CV87, Q9D728
      Related
      ENSMUSP00000030033.5, ENSMUST00000030033.5
      Conserved Domains (1) summary
      pfam15237
      Location:28263
      PTRF_SDPR; PTRF/SDPR family

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      48663514..48673492
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)