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    A20/AN1-like zinc finger family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828381, updated on 18-Sep-2024

    Summary

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    Official Full Name
    A20/AN1-like zinc finger family protein
    Primary source
    TAIR:AT4G22820
    Locus tag
    AT4G22820
    See related
    Araport:AT4G22820
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F7H19.10
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    2
    Sequence:
    Chromosome: 4; NC_003075.7 (11987649..11989087, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Putative AT-hook DNA-binding family protein Neighboring gene ncRNA Neighboring gene YCF49-like protein Neighboring gene Sodium Bile acid symporter family

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis stress associated protein 9 mediates biotic and abiotic stress responsive ABA signaling via the proteasome pathway. Kang M, et al. Plant Cell Environ, 2017 May. PMID 28039858
    2. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. AtSAP9 regulates abiotic and biotic stress responses, possibly via the ubiquitination/proteasome pathway.[AtSAP9]
      Title: Arabidopsis stress associated protein 9 mediates biotic and abiotic stress responsive ABA signaling via the proteasome pathway.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_118411.4
    NM_202865.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within defense response to other organism IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within proteasome-mediated ubiquitin-dependent protein catabolic process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within protein ubiquitination IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    A20/AN1-like zinc finger family protein
    NP_194013.1
    • A20/AN1-like zinc finger family protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, AN1-type (InterPro:IPR000058), Zinc finger, A20-type (InterPro:IPR002653); BEST Arabidopsis thaliana protein match is: A20/AN1-like zinc finger family protein (TAIR:AT4G12040.2); Has 1063 Blast hits to 1051 proteins in 151 species: Archae - 6; Bacteria - 0; Metazoa - 438; Fungi - 9; Plants - 483; Viruses - 6; Other Eukaryotes - 121 (source: NCBI BLink).
    NP_974594.1
    • A20/AN1-like zinc finger family protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, AN1-type (InterPro:IPR000058), Zinc finger, A20-type (InterPro:IPR002653); BEST Arabidopsis thaliana protein match is: A20/AN1-like zinc finger family protein (TAIR:AT4G12040.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      11987649..11989087 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118411.4 → NP_194013.1  A20/AN1-like zinc finger family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194013.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O49663
      UniProtKB/TrEMBL
      A0A178V0C3, A0A7G2F2W6
      Conserved Domains (2) summary
      smart00154
      Location:117 → 154
      ZnF_AN1; AN1-like Zinc finger
      pfam01754
      Location:21 → 42
      zf-A20; A20-like zinc finger

    2. NM_202865.1 → NP_974594.1  A20/AN1-like zinc finger family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974594.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O49663
      UniProtKB/TrEMBL
      A0A178V0C3, A0A7G2F2W6
      Conserved Domains (2) summary
      smart00154
      Location:117 → 154
      ZnF_AN1; AN1-like Zinc finger
      pfam01754
      Location:21 → 42
      zf-A20; A20-like zinc finger
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O49663.1

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