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    Ccdc121rt1 coiled-coil domain containing 121, retrogene 1 [ Mus musculus (house mouse) ]

    Gene ID: 403180, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Ccdc121rt1provided by MGI
    Official Full Name
    coiled-coil domain containing 121, retrogene 1provided by MGI
    Primary source
    MGI:MGI:2685601
    See related
    Ensembl:ENSMUSG00000050625 AllianceGenome:MGI:2685601
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm755; Ccdc121; 6530421E24Rik
    Summary
    Orthologous to human CCDC121 (coiled-coil domain containing 121). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See Ccdc121rt1 in Genome Data Viewer
    Location:
    1 H4; 1 84.69 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (181337198..181339016, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (181509633..181511451, complement)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 39717 Neighboring gene cornichon family AMPA receptor auxiliary protein 3 Neighboring gene predicted gene 16547 Neighboring gene STARR-seq mESC enhancer starr_03238 Neighboring gene STARR-seq mESC enhancer starr_03239 Neighboring gene STARR-positive B cell enhancer mm9_chr1:183475630-183475931 Neighboring gene predicted gene, 32767 Neighboring gene dynein, axonemal, heavy chain 14 Neighboring gene STARR-seq mESC enhancer starr_03241 Neighboring gene predicted gene, 33612

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of stage-specific markers during differentiation of hair cells from mouse inner ear stem cells or progenitor cells in vitro. Liu Q, et al. Int J Biochem Cell Biol, 2015 Mar. PMID 25582750
    2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    coiled-coil domain containing 121rt1
    Names
    coiled-coil domain containing 121

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_207280.3 → NP_997163.2  coiled-coil domain containing 121rt1

      Status: VALIDATED

      Source sequence(s)
      AC113509, AK078370, BQ175152, BY243316
      Consensus CDS
      CCDS48472.1
      UniProtKB/TrEMBL
      E9Q6D3
      Related
      ENSMUSP00000052294.5, ENSMUST00000058825.5
      Conserved Domains (2) summary
      pfam14988
      Location:77 → 282
      DUF4515; Domain of unknown function (DUF4515)
      cl19252
      Location:236 → 271
      MreC; rod shape-determining protein MreC

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      181337198..181339016 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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