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    Integral membrane HPP family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 823953, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Integral membrane HPP family protein
    Primary source
    TAIR:AT3G47980
    Locus tag
    AT3G47980
    See related
    Araport:AT3G47980
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    5
    Sequence:
    Chromosome: 3; NC_003074.8 (17710160..17712946)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene SUGAR-INSENSITIVE 3 Neighboring gene aldehyde dehydrogenase 2B4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Nitrite transport activity of a novel HPP family protein conserved in cyanobacteria and chloroplasts. Maeda S, et al. Plant Cell Physiol, 2014 Jul. PMID 24904028
    2. A user-friendly platform for yeast two-hybrid library screening using next generation sequencing. Erffelinck ML, et al. PLoS One, 2018. PMID 30576311, Free PMC Article
    3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_114667.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Integral membrane HPP family protein
    NP_190381.3
    • Integral membrane HPP family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane, chloroplast; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: HPP (InterPro:IPR007065); BEST Arabidopsis thaliana protein match is: Integral membrane HPP family protein (TAIR:AT5G62720.1); Has 1433 Blast hits to 1433 proteins in 460 species: Archae - 0; Bacteria - 811; Metazoa - 0; Fungi - 64; Plants - 57; Viruses - 0; Other Eukaryotes - 501 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      17710160..17712946
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_114667.5 → NP_190381.3  Integral membrane HPP family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190381.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VJA2, A0A384K958, A0A5S9XJL7, Q84MC3
      Conserved Domains (1) summary
      pfam04982
      Location:134 → 236
      HPP; HPP family
    Nucleotide Protein
    Heading Accession and Version

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