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    late embryogenesis abundant protein, putative / LEA protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824470, updated on 18-Sep-2024

    Summary

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    Official Full Name
    late embryogenesis abundant protein, putative / LEA protein
    Primary source
    TAIR:AT3G53040
    Locus tag
    AT3G53040
    See related
    Araport:AT3G53040
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (19664629..19666497, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Ribosomal protein L24e family protein Neighboring gene ser/arg-rich protein kinase 4 Neighboring gene D-galactoside/L-rhamnose binding SUEL lectin protein Neighboring gene SKP1-like 6

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A novel approach to dissect the abscission process in Arabidopsis. González-Carranza ZH, et al. Plant Physiol, 2012 Nov. PMID 22992509, Free PMC Article
    2. The ubiquitous distribution of late embryogenesis abundant proteins across cell compartments in Arabidopsis offers tailored protection against abiotic stress. Candat A, et al. Plant Cell, 2014 Jul. PMID 25005920, Free PMC Article
    3. The Arabidopsis metacaspase9 degradome. Tsiatsiani L, et al. Plant Cell, 2013 Aug. PMID 23964026, Free PMC Article
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_115164.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within floral organ abscission IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol HDA PubMed 

    General protein information

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    Preferred Names
    late embryogenesis abundant protein, putative / LEA protein
    NP_190872.1
    • late embryogenesis abundant protein, putative / LEA protein, putative; INVOLVED IN: embryo development ending in seed dormancy; EXPRESSED IN: seed; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 4 (InterPro:IPR004238); BEST Arabidopsis thaliana protein match is: embryonic cell protein 63 (TAIR:AT2G36640.1); Has 58153 Blast hits to 33178 proteins in 2866 species: Archae - 714; Bacteria - 20429; Metazoa - 14816; Fungi - 4800; Plants - 4772; Viruses - 420; Other Eukaryotes - 12202 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      19664629..19666497 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115164.3 → NP_190872.1  late embryogenesis abundant protein, putative / LEA protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190872.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LF88
      UniProtKB/TrEMBL
      A0A5S9XKB9, A0A654FGX5
      Conserved Domains (1) summary
      cl26511
      Location:106 → 385
      Neuromodulin_N; Gap junction protein N-terminal region
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LF88.1

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