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    UPL7 ubiquitin-protein ligase 7 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824475, updated on 18-Sep-2024

    Summary

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    Official Symbol
    UPL7
    Official Full Name
    ubiquitin-protein ligase 7
    Primary source
    TAIR:AT3G53090
    Locus tag
    AT3G53090
    See related
    Araport:AT3G53090
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ubiquitin-protein ligase 7
    Summary
    encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis.
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    Genomic context

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    See UPL7 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    15
    Sequence:
    Chromosome: 3; NC_003074.8 (19679177..19685360)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene D-galactoside/L-rhamnose binding SUEL lectin protein Neighboring gene D-galactoside/L-rhamnose binding SUEL lectin protein Neighboring gene GDSL-like Lipase/Acylhydrolase superfamily protein Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene Modifier of rudimentary (Mod(r)) protein Neighboring gene Cytochrome P450 superfamily protein Neighboring gene O-methyltransferase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The HECT ubiquitin-protein ligase (UPL) family in Arabidopsis: UPL3 has a specific role in trichome development. Downes BP, et al. Plant J, 2003 Sep. PMID 12969426
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001035773.2
    NM_115169.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ubiquitin-protein transferase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein polyubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within protein ubiquitination ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    part_of ubiquitin ligase complex ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ubiquitin-protein ligase 7
    NP_001030850.1
    • ubiquitin-protein ligase 7 (UPL7); CONTAINS InterPro DOMAIN/s: HECT (InterPro:IPR000569), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: ubiquitin protein ligase 6 (TAIR:AT3G17205.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_190877.1
    • ubiquitin-protein ligase 7 (UPL7); CONTAINS InterPro DOMAIN/s: HECT (InterPro:IPR000569), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: ubiquitin protein ligase 6 (TAIR:AT3G17205.3); Has 4481 Blast hits to 4316 proteins in 248 species: Archae - 0; Bacteria - 0; Metazoa - 2549; Fungi - 797; Plants - 365; Viruses - 0; Other Eukaryotes - 770 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      19679177..19685360
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115169.3 → NP_190877.1  ubiquitin-protein ligase 7 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190877.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WUM3, Q9SCQ2
      UniProtKB/TrEMBL
      A0A7G2EWA1
      Conserved Domains (2) summary
      smart00119
      Location:799 → 1139
      HECTc; Domain Homologous to E6-AP Carboxyl Terminus with
      cd00078
      Location:774 → 1140
      HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...

    2. NM_001035773.2 → NP_001030850.1  ubiquitin-protein ligase 7 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001030850.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WUM3, Q9SCQ2
      UniProtKB/TrEMBL
      A0A7G2EWA1
      Conserved Domains (2) summary
      smart00119
      Location:799 → 1139
      HECTc; Domain Homologous to E6-AP Carboxyl Terminus with
      cd00078
      Location:774 → 1140
      HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SCQ2.1

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