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    GRAS family transcription factor [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818342, updated on 18-Sep-2024

    Summary

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    Official Full Name
    GRAS family transcription factor
    Primary source
    TAIR:AT2G37650
    Locus tag
    AT2G37650
    See related
    Araport:AT2G37650
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F13M22.15; F13M22_15
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    3
    Sequence:
    Chromosome: 2; NC_003071.7 (15792545..15795235)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene actin 1 Neighboring gene myb-like HTH transcriptional regulator family protein Neighboring gene Barwin-like endoglucanases superfamily protein Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene far-red elongated hypocotyl 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    NM_129321.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    GRAS family transcription factor
    NP_181301.1
    • GRAS family transcription factor; CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: SCARECROW-like 14 (TAIR:AT1G07530.1); Has 2417 Blast hits to 2350 proteins in 288 species: Archae - 0; Bacteria - 4; Metazoa - 2; Fungi - 0; Plants - 2410; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      15792545..15795235
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001336667.1 → NP_001323705.1  GRAS family transcription factor [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VXE6, A0A1P8AXT9

    2. NM_129321.2 → NP_181301.1  GRAS family transcription factor [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_181301.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O80933, Q9SYQ5
      UniProtKB/TrEMBL
      A0A178VXE6, A0A654EZQ5
      Conserved Domains (1) summary
      pfam03514
      Location:350 → 713
      GRAS; GRAS domain family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O80933.1

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