U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    peroxidase superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818746, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    peroxidase superfamily protein
    Primary source
    TAIR:AT2G41480
    Locus tag
    AT2G41480
    See related
    Araport:AT2G41480
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtPRX25; peroxidase 25; PRX25; T26J13.7; T26J13_7
    Summary
    Encodes a cationic cell-wall-bound peroxidase homolog that is involved in the lignification of cell walls.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 2
    Exon count:
    4
    Sequence:
    Chromosome: 2; NC_003071.7 (17296894..17298725, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene F-box family protein Neighboring gene Embryo-specific protein 3, (ATS3) Neighboring gene UDP-glcnac-adolichol phosphate glcnac-1-p-transferase Neighboring gene WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-like protein Neighboring gene uncharacterized protein Neighboring gene cytokinin oxidase/dehydrogenase 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. PRX2 and PRX25, peroxidases regulated by COG1, are involved in seed longevity in Arabidopsis. Renard J, et al. Plant Cell Environ, 2020 Feb. PMID 31600827
    2. Simultaneously disrupting AtPrx2, AtPrx25 and AtPrx71 alters lignin content and structure in Arabidopsis stem. Shigeto J, et al. J Integr Plant Biol, 2015 Apr. PMID 25644691
    3. Catalytic profile of Arabidopsis peroxidases, AtPrx-2, 25 and 71, contributing to stem lignification. Shigeto J, et al. PLoS One, 2014. PMID 25137070, Free PMC Article
    4. Putative cationic cell-wall-bound peroxidase homologues in Arabidopsis, AtPrx2, AtPrx25, and AtPrx71, are involved in lignification. Shigeto J, et al. J Agric Food Chem, 2013 Apr 24. PMID 23551275
    5. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. PRX2 and PRX25, peroxidases regulated by COG1, are involved in seed longevity in Arabidopsis.
      Title: PRX2 and PRX25, peroxidases regulated by COG1, are involved in seed longevity in Arabidopsis.
    2. Simultaneous deficiency of AtPrx2, AtPrx25 and AtPrx71 peroxidases alters lignin content and structure in Arabidopsis stem. [AtPrx25]
      Title: Simultaneously disrupting AtPrx2, AtPrx25 and AtPrx71 alters lignin content and structure in Arabidopsis stem.
    3. Assays with ferrocytochrome c as a substrate showed that AtPrx2, AtPrx25, and AtPrx71 possessed the ability to oxidize large molecules. Plant peroxidases responsible for lignin polymerization are able to directly oxidize all lignin precursors. [AtPrx25]
      Title: Catalytic profile of Arabidopsis peroxidases, AtPrx-2, 25 and 71, contributing to stem lignification.
    Submit: New GeneRIF Correction

    General gene information

    Go to the top of the page Help
    NM_129711.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables heme binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables lactoperoxidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables peroxidase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within cellular oxidant detoxification IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within lignin metabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within plant-type cell wall organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in response to oxidative stress IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    peroxidase superfamily protein
    NP_181679.4
    • Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: oxidation reduction, response to oxidative stress; EXPRESSED IN: root, leaf; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Peroxidase, active site (InterPro:IPR019794), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT5G64120.1); Has 4041 Blast hits to 4016 proteins in 197 species: Archae - 0; Bacteria - 4; Metazoa - 16; Fungi - 31; Plants - 3957; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      17296894..17298725 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_129711.4 → NP_181679.4  peroxidase superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IKW6, O80822, Q8L728
      UniProtKB/TrEMBL
      A0A5S9X626
      Conserved Domains (1) summary
      cd00693
      Location:29 → 327
      secretory_peroxidase; Horseradish peroxidase and related secretory plant peroxidases
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O80822.2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools