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    phospholipase-like protein (PEARLI 4) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816192, updated on 18-Sep-2024

    Summary

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    Official Full Name
    phospholipase-like protein (PEARLI 4) family protein
    Primary source
    TAIR:AT2G16900
    Locus tag
    AT2G16900
    See related
    Araport:AT2G16900
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F12A24.8; F12A24_8
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    3
    Sequence:
    Chromosome: 2; NC_003071.7 (7323570..7326317, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene UDP-Glycosyltransferase superfamily protein Neighboring gene miscRNA Neighboring gene miscRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A DEK domain-containing protein modulates chromatin structure and function in Arabidopsis. Waidmann S, et al. Plant Cell, 2014 Nov. PMID 25387881, Free PMC Article
    2. Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana. Van Leene J, et al. Mol Syst Biol, 2010 Aug 10. PMID 20706207, Free PMC Article
    3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001084434.2
    NM_001124861.2
    NM_001335500.1
    NM_001335501.1
    NM_127243.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    phospholipase-like protein (PEARLI 4) family protein
    NP_001077903.1
    • Arabidopsis phospholipase-like protein (PEARLI 4) family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase-like, arabidopsis (InterPro:IPR007942); BEST Arabidopsis thaliana protein match is: Arabidopsis phospholipase-like protein (PEARLI 4) family (TAIR:AT4G35110.3); Has 374 Blast hits to 290 proteins in 60 species: Archae - 10; Bacteria - 16; Metazoa - 42; Fungi - 12; Plants - 162; Viruses - 45; Other Eukaryotes - 87 (source: NCBI BLink).
    NP_001118333.1
    • Arabidopsis phospholipase-like protein (PEARLI 4) family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase-like, arabidopsis (InterPro:IPR007942); BEST Arabidopsis thaliana protein match is: Arabidopsis phospholipase-like protein (PEARLI 4) family (TAIR:AT4G35110.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_565397.1
    • Arabidopsis phospholipase-like protein (PEARLI 4) family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase-like, arabidopsis (InterPro:IPR007942); BEST Arabidopsis thaliana protein match is: Arabidopsis phospholipase-like protein (PEARLI 4) family (TAIR:AT4G35110.2); Has 457 Blast hits to 353 proteins in 76 species: Archae - 10; Bacteria - 16; Metazoa - 75; Fungi - 22; Plants - 192; Viruses - 47; Other Eukaryotes - 95 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      7323570..7326317 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001335498.1 → NP_001324295.1  phospholipase-like protein (PEARLI 4) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A8MRF0
      Conserved Domains (1) summary
      pfam05278
      Location:71 → 291
      PEARLI-4; Arabidopsis phospholipase-like protein (PEARLI 4)

    2. NM_001335499.1 → NP_001324294.1  phospholipase-like protein (PEARLI 4) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654ETF3, Q94BU9, Q9ZVX3

    3. NM_127243.3 → NP_565397.1  phospholipase-like protein (PEARLI 4) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565397.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654ETF3, Q94BU9, Q9ZVX3
      Conserved Domains (1) summary
      pfam05278
      Location:160 → 380
      PEARLI-4; Arabidopsis phospholipase-like protein (PEARLI 4)

    4. NM_001335501.1 → NP_001324296.1  phospholipase-like protein (PEARLI 4) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A8MRF0
      Conserved Domains (1) summary
      pfam05278
      Location:71 → 291
      PEARLI-4; Arabidopsis phospholipase-like protein (PEARLI 4)

    5. NM_001335500.1 → NP_001324297.1  phospholipase-like protein (PEARLI 4) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654ETF3, Q94BU9, Q9ZVX3

    6. NM_001084434.2 → NP_001077903.1  phospholipase-like protein (PEARLI 4) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077903.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A8MRF0
      Conserved Domains (1) summary
      pfam05278
      Location:71 → 291
      PEARLI-4; Arabidopsis phospholipase-like protein (PEARLI 4)

    7. NM_001124861.2 → NP_001118333.1  phospholipase-like protein (PEARLI 4) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001118333.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A8MRF0
      Conserved Domains (1) summary
      pfam05278
      Location:71 → 291
      PEARLI-4; Arabidopsis phospholipase-like protein (PEARLI 4)
    Nucleotide Protein
    Heading Accession and Version

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