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    RAB6-interacting golgin (DUF662) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817320, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RAB6-interacting golgin (DUF662)
    Primary source
    TAIR:AT2G27740
    Locus tag
    AT2G27740
    See related
    Araport:AT2G27740
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F15K20.16; F15K20_16
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    4
    Sequence:
    Chromosome: 2; NC_003071.7 (11822513..11823857)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene 60S acidic ribosomal protein family Neighboring gene copper ion binding protein Neighboring gene Surfeit locus protein 6 Neighboring gene tRNAisopentenyltransferase 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001336125.1
    NM_128333.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RAB6-interacting golgin (DUF662)
    NP_180342.1
    • Family of unknown function (DUF662); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF662 (InterPro:IPR007033); BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF662) (TAIR:AT2G36410.2); Has 1272 Blast hits to 1189 proteins in 227 species: Archae - 42; Bacteria - 139; Metazoa - 529; Fungi - 66; Plants - 146; Viruses - 5; Other Eukaryotes - 345 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      11822513..11823857
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128333.4 → NP_180342.1  RAB6-interacting golgin (DUF662) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180342.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VUH7, A0A5S9X1Z9, Q9ZUX5
      Conserved Domains (1) summary
      pfam04949
      Location:19 → 170
      Transcrip_act; Transcriptional activator

    2. NM_001336125.1 → NP_001325384.1  RAB6-interacting golgin (DUF662) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B323
    Nucleotide Protein
    Heading Accession and Version

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