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    PMD1 Tropomyosin-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825053, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PMD1
    Official Full Name
    Tropomyosin-like protein
    Primary source
    TAIR:AT3G58840
    Locus tag
    AT3G58840
    See related
    Araport:AT3G58840
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    peroxisomal and mitochondrial division factor 1
    Summary
    Encodes PEROXISOMAL AND MITOCHONDRIAL DIVISION FACTOR1. Involved in the morphogenesis and proliferation of peroxisomes and mitochondria.
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    Genomic context

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    See PMD1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (21757073..21758969, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene F-box/RNI-like superfamily protein Neighboring gene haloacid dehalogenase (HAD) superfamily protein Neighboring gene phy rapidly regulated 2 Neighboring gene F-box/RNI-like superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Kinase MPK17 and the Peroxisome Division Factor PMD1 Influence Salt-induced Peroxisome Proliferation. Frick EM, et al. Plant Physiol, 2018 Jan. PMID 28931630, Free PMC Article
    2. The Arabidopsis tail-anchored protein PEROXISOMAL AND MITOCHONDRIAL DIVISION FACTOR1 is involved in the morphogenesis and proliferation of peroxisomes and mitochondria. Aung K, et al. Plant Cell, 2011 Dec. PMID 22147290, Free PMC Article
    3. Experimental analysis of the Arabidopsis mitochondrial proteome highlights signaling and regulatory components, provides assessment of targeting prediction programs, and indicates plant-specific mitochondrial proteins. Heazlewood JL, et al. Plant Cell, 2004 Jan. PMID 14671022, Free PMC Article
    4. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
    5. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. MPK17 and PMD1 are involved in peroxisome proliferation in response to sodium chloride stress.
      Title: Kinase MPK17 and the Peroxisome Division Factor PMD1 Influence Salt-induced Peroxisome Proliferation.
    2. PEROXISOMAL and MITOCHONDRIAL DIVISION FACTOR1 (PMD1) facilitates peroxisomal and mitochondrial proliferation.
      Title: The Arabidopsis tail-anchored protein PEROXISOMAL AND MITOCHONDRIAL DIVISION FACTOR1 is involved in the morphogenesis and proliferation of peroxisomes and mitochondria.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001084843.2
    NM_115746.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein homodimerization activity IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within mitochondrion organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within peroxisome organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 
    located_in mitochondrial membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in mitochondrion HDA PubMed 
    located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in peroxisomal membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in peroxisome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Tropomyosin-like protein
    NP_001078312.1
    • Tropomyosin-related; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: Tropomyosin-related (TAIR:AT1G06530.1); Has 153329 Blast hits to 70216 proteins in 3225 species: Archae - 2898; Bacteria - 24754; Metazoa - 70421; Fungi - 12510; Plants - 7496; Viruses - 710; Other Eukaryotes - 34540 (source: NCBI BLink).
    NP_191443.1
    • Tropomyosin-related; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: Tropomyosin-related (TAIR:AT1G06530.1); Has 153429 Blast hits to 70272 proteins in 3237 species: Archae - 2904; Bacteria - 24810; Metazoa - 70427; Fungi - 12541; Plants - 7497; Viruses - 710; Other Eukaryotes - 34540 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      21757073..21758969 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001084843.2 → NP_001078312.1  Tropomyosin-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078312.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8L998, Q9LXR8
      UniProtKB/TrEMBL
      A0A178VH75, A0A5S9XMB8
      Conserved Domains (1) summary
      TIGR02168
      Location:24 → 266
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    2. NM_115746.1 → NP_191443.1  Tropomyosin-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191443.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8L998, Q9LXR8
      UniProtKB/TrEMBL
      A0A178VH75, A0A5S9XMB8
      Conserved Domains (1) summary
      TIGR02168
      Location:24 → 266
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LXR8.1

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