U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    RBL15 RHOMBOID-like protein 15 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825015, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    RBL15
    Official Full Name
    RHOMBOID-like protein 15
    Primary source
    TAIR:AT3G58460
    Locus tag
    AT3G58460
    See related
    Araport:AT3G58460
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARABIDOPSIS RHOMBOID-LIKE PROTEIN 11; ATRBL11; ATRBL15; RBL11; rhomboid-like protein 11; RHOMBOID-like protein 15
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See RBL15 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    13
    Sequence:
    Chromosome: 3; NC_003074.8 (21623179..21626701, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene TRAF-like superfamily protein Neighboring gene Adenine nucleotide alpha hydrolases-like superfamily protein Neighboring gene nucleic acid binding / methyltransferase Neighboring gene calmodulin-binding family protein Neighboring gene Phosphatidic acid phosphatase (PAP2) family protein Neighboring gene protein phosphatase 2A-4

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    2. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_001203197.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables serine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytosol HDA PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    RHOMBOID-like protein 15
    NP_001190126.1
    • RHOMBOID-like protein 15 (RBL15); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: RHOMBOID-like protein 14 (TAIR:AT3G17611.1).
    NP_567064.1
    • RHOMBOID-like protein 15 (RBL15); CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: RHOMBOID-like protein 14 (TAIR:AT3G17611.1); Has 3199 Blast hits to 3199 proteins in 1221 species: Archae - 73; Bacteria - 2108; Metazoa - 163; Fungi - 156; Plants - 314; Viruses - 3; Other Eukaryotes - 382 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      21623179..21626701 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115708.4 → NP_567064.1  RHOMBOID-like protein 15 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567064.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      C0Z2U1, Q8L7A1, Q8LB17, Q9M2H0
      UniProtKB/TrEMBL
      A0A178VGV9, A0A5S9XLY2
      Conserved Domains (3) summary
      cd14287
      Location:364 → 399
      UBA_At3g58460_like; UBA domain found in uncharacterized protein At3g58460 from Arabidopsis thaliana and its homologs from other plants
      TIGR00601
      Location:299 → 400
      rad23; UV excision repair protein Rad23
      pfam01694
      Location:58 → 212
      Rhomboid; Rhomboid family

    2. NM_001203197.1 → NP_001190126.1  RHOMBOID-like protein 15 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190126.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XLY2, F4J5V3
      Conserved Domains (2) summary
      cd14287
      Location:387 → 422
      UBA_At3g58460_like; UBA domain found in uncharacterized protein At3g58460 from Arabidopsis thaliana and its homologs from other plants
      pfam01694
      Location:81 → 235
      Rhomboid; Rhomboid family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8LB17.2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.