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    centromere protein X [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 844215, updated on 18-Sep-2024

    Summary

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    Official Full Name
    centromere protein X
    Primary source
    TAIR:AT1G78790
    Locus tag
    AT1G78790
    See related
    Araport:AT1G78790
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtMHF2; F9K20.17; F9K20_17; MHF2
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    8
    Sequence:
    Chromosome: 1; NC_003070.9 (29623205..29625078, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene F-box/RNI-like superfamily protein Neighboring gene anaphase promoting complex 6 Neighboring gene pathogenesis-related family protein Neighboring gene UDP-Glycosyltransferase superfamily protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. FANCM-associated proteins MHF1 and MHF2, but not the other Fanconi anemia factors, limit meiotic crossovers. Girard C, et al. Nucleic Acids Res, 2014 Aug. PMID 25038251, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. MHF2 limits crossover formation at meiosis.
      Title: FANCM-associated proteins MHF1 and MHF2, but not the other Fanconi anemia factors, limit meiotic crossovers.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001084374.1
    NM_001334846.1
    NM_001334847.1
    NM_106526.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within homologous chromosome pairing at meiosis IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in kinetochore assembly IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    centromere protein X
    NP_001077843.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2008 (InterPro:IPR018552); Has 27 Blast hits to 27 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_178000.2
    • unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2008 (InterPro:IPR018552); Has 69 Blast hits to 69 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 33; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      29623205..29625078 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106526.4 → NP_178000.2  centromere protein X [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_178000.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8L7N3, Q9ZV97
      UniProtKB/TrEMBL
      A0A178WHI0
      Conserved Domains (1) summary
      pfam09415
      Location:54 → 103
      CENP-X; CENP-S associating Centromere protein X

    2. NM_001334846.1 → NP_001323103.1  centromere protein X [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8L7N3, Q9ZV97
      UniProtKB/TrEMBL
      A0A178WHI0
      Conserved Domains (1) summary
      pfam09415
      Location:54 → 103
      CENP-X; CENP-S associating Centromere protein X

    3. NM_001334847.1 → NP_001323102.1  centromere protein X [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8L7N3, Q9ZV97
      UniProtKB/TrEMBL
      A0A178WHI0
      Conserved Domains (1) summary
      pfam09415
      Location:54 → 103
      CENP-X; CENP-S associating Centromere protein X

    4. NM_001084374.1 → NP_001077843.1  centromere protein X [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077843.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4IBV2
      Conserved Domains (1) summary
      pfam09415
      Location:21 → 85
      CENP-X; CENP-S associating Centromere protein X
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8L7N3.1

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