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    bZIP domain class transcription factor (DUF630 and DUF632) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825203, updated on 18-Sep-2024

    Summary

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    Official Full Name
    bZIP domain class transcription factor (DUF630 and DUF632)
    Primary source
    TAIR:AT3G60320
    Locus tag
    AT3G60320
    See related
    Araport:AT3G60320
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (22291886..22295529, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene RWD domain-containing protein Neighboring gene acyl-CoA synthetase family protein Neighboring gene miscRNA Neighboring gene uncharacterized protein Neighboring gene H[+]-ATPase 7 Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene ARABIDILLO-2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Xu N, et al. Plant Cell, 2016 Feb. PMID 26744214, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_115896.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within cellular response to nitrate IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within nitrate transmembrane transport IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within nitrogen compound transport IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to nitrate IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to nitrogen compound IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    bZIP domain class transcription factor (DUF630 and DUF632)
    NP_191591.2
    • Protein of unknown function (DUF630 and DUF632); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF630 (InterPro:IPR006868), Protein of unknown function DUF632 (InterPro:IPR006867); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF630 and DUF632) (TAIR:AT1G02110.1); Has 6322 Blast hits to 3163 proteins in 311 species: Archae - 2; Bacteria - 139; Metazoa - 1165; Fungi - 535; Plants - 1058; Viruses - 107; Other Eukaryotes - 3316 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      22291886..22295529 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115896.3 → NP_191591.2  bZIP domain class transcription factor (DUF630 and DUF632) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191591.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q56XC8, Q93YU8, Q9LY33
      UniProtKB/TrEMBL
      A0A178VF88, A0A5S9XMR7, A0A654FJH5
      Conserved Domains (3) summary
      pfam04782
      Location:357 → 660
      DUF632; Protein of unknown function (DUF632)
      pfam04783
      Location:1 → 59
      DUF630; Protein of unknown function (DUF630)
      cl28929
      Location:56 → 138
      VirB10_like; VirB10 and similar proteins form part of core complex in Type IV secretion system (T4SS)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q93YU8.1

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