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    RING/U-box protein with C6HC-type zinc finger protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816151, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RING/U-box protein with C6HC-type zinc finger protein
    Primary source
    TAIR:AT2G16520
    Locus tag
    AT2G16520
    See related
    Araport:AT2G16520
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F1P15.10; F1P15_10
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    2
    Sequence:
    Chromosome: 2; NC_003071.7 (7161922..7162580, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene maternally expressed family protein Neighboring gene ATPase, F0/V0 complex, subunit C protein Neighboring gene ncRNA Neighboring gene 3-oxo-5-alpha-steroid 4-dehydrogenase family protein Neighboring gene maternally expressed family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_127206.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA-DNA hybrid ribonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RING/U-box protein with C6HC-type zinc finger protein
    NP_179245.1
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G45560.1); Has 72 Blast hits to 69 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      7161922..7162580 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127206.2 → NP_179245.1  RING/U-box protein with C6HC-type zinc finger protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179245.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654ETC0, Q9SI63
      Conserved Domains (1) summary
      cl14782
      Location:1 → 77
      RNase_H_like; Ribonuclease H-like superfamily, including RNase H, HI, HII, HIII, and RNase-like domain IV of spliceosomal protein Prp8
    Nucleotide Protein
    Heading Accession and Version

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