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    RUN/FYVE domain protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 3766692, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RUN/FYVE domain protein
    Primary source
    TAIR:AT1G10417
    Locus tag
    AT1G10417
    See related
    Araport:AT1G10417
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Summary
    Encodes protein with unknown function whose expression is repressed by inoculation with Agrobacterium tumerifaciens.
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    12
    Sequence:
    Chromosome: 1; NC_003070.9 (3424186..3427531, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene UDP-Glycosyltransferase superfamily protein Neighboring gene CW14 protein (DUF1336) Neighboring gene ncRNA Neighboring gene miscRNA Neighboring gene protein phosphatase 2A-2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001035942.5
    NM_001331903.1
    NM_001331904.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RUN/FYVE domain protein
    NP_001031019.4
    • unknown protein; Has 26006 Blast hits to 16906 proteins in 1326 species: Archae - 433; Bacteria - 3134; Metazoa - 12646; Fungi - 2033; Plants - 1219; Viruses - 58; Other Eukaryotes - 6483 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      3424186..3427531 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001331902.1 → NP_001322065.1  RUN/FYVE domain protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8ASU2

    2. NM_001035942.5 → NP_001031019.4  RUN/FYVE domain protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031019.4

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9TN69, F4I4C1
      Conserved Domains (1) summary
      COG1196
      Location:81 → 353
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    3. NM_001331904.1 → NP_001322064.1  RUN/FYVE domain protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8ASY5, A0A5S9TN69

    4. NM_001331903.1 → NP_001322063.1  RUN/FYVE domain protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8ASU1
    Nucleotide Protein
    Heading Accession and Version

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