U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    CALS1 callose synthase 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837059, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    CALS1
    Official Full Name
    callose synthase 1
    Primary source
    TAIR:AT1G05570
    Locus tag
    AT1G05570
    See related
    Araport:AT1G05570
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATGSL06; ATGSL6; callose synthase 1; F3F20.1; F3F20_1; GLUCAN SYNTHASE-LIKE 6; GSL06; GSL6
    Summary
    Encodes a callose synthase 1 catalytic subunit . Member of Glycosyltransferase Family- 48.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See CALS1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    44
    Sequence:
    Chromosome: 1; NC_003070.9 (1647575..1659611, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene hypothetical protein (DUF295) Neighboring gene ncRNA Neighboring gene UDP-glucosyltransferase 75B1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene UPSTREAM OF FLC protein (DUF966)

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Arabidopsis callose synthases CalS1/8 regulate plasmodesmal permeability during stress. Cui W, et al. Nat Plants, 2016 Apr 11. PMID 27243643
    2. Regulation of callose synthase activity in situ in alamethicin-permeabilized Arabidopsis and tobacco suspension cells. Aidemark M, et al. BMC Plant Biol, 2009 Mar 12. PMID 19284621, Free PMC Article
    3. A cell plate-specific callose synthase and its interaction with phragmoplastin. Hong Z, et al. Plant Cell, 2001 Apr. PMID 11283334, Free PMC Article
    4. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
    5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

    Go to the top of the page

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_001197984.1
    NM_001331555.1
    NM_001331556.1
    NM_100436.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables 1,3-beta-D-glucan synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables 1,3-beta-D-glucan synthase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables glycosyltransferase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    involved_in (1->3)-beta-D-glucan biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of 1,3-beta-D-glucan synthase complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cell plate IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasmodesma HDA PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    callose synthase 1
    NP_001184913.1
    • callose synthase 1 (CALS1); CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 48 (InterPro:IPR003440), Protein of unknown function DUF605 (InterPro:IPR006745); BEST Arabidopsis thaliana protein match is: glucan synthase-like 3 (TAIR:AT2G31960.2).
    NP_563743.2
    • callose synthase 1 (CALS1); FUNCTIONS IN: transferase activity, transferring glycosyl groups, 1,3-beta-glucan synthase activity; INVOLVED IN: 1,3-beta-glucan biosynthetic process; LOCATED IN: 1,3-beta-glucan synthase complex, plasma membrane, cell plate; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 48 (InterPro:IPR003440), Protein of unknown function DUF605 (InterPro:IPR006745); BEST Arabidopsis thaliana protein match is: glucan synthase-like 3 (TAIR:AT2G31960.2); Has 1391 Blast hits to 1051 proteins in 182 species: Archae - 0; Bacteria - 0; Metazoa - 73; Fungi - 706; Plants - 540; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      1647575..1659611 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100436.5 → NP_563743.2  callose synthase 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563743.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WPU7, Q9AUE0, Q9LR43, Q9SYJ7
      UniProtKB/TrEMBL
      A0A178W960
      Conserved Domains (3) summary
      pfam02364
      Location:1048 → 1804
      Glucan_synthase; 1,3-beta-glucan synthase component
      pfam04652
      Location:47 → 169
      Vta1; Vta1 like
      pfam14288
      Location:318 → 430
      FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1

    2. NM_001331555.1 → NP_001322482.1  callose synthase 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WPU7, Q9AUE0, Q9LR43, Q9SYJ7
      UniProtKB/TrEMBL
      A0A178W960

    3. NM_001331556.1 → NP_001322483.1  callose synthase 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WPU7, Q9AUE0, Q9LR43, Q9SYJ7
      UniProtKB/TrEMBL
      A0A178W960

    4. NM_001197984.1 → NP_001184913.1  callose synthase 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001184913.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W960, F4I8T3
      Conserved Domains (3) summary
      pfam02364
      Location:1007 → 1763
      Glucan_synthase; 1,3-beta-glucan synthase component
      pfam04652
      Location:47 → 169
      Vta1; Vta1 like
      pfam14288
      Location:318 → 430
      FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9AUE0.2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.