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    Leucine-rich repeat family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 6240885, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Leucine-rich repeat family protein
    Primary source
    TAIR:AT1G73066
    Locus tag
    AT1G73066
    See related
    Araport:AT1G73066
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (27481785..27484078)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Glucose-methanol-choline (GMC) oxidoreductase family protein Neighboring gene Low PSII Accumulation 3 Neighboring gene uncharacterized protein Neighboring gene PEP1 receptor 1 Neighboring gene WD repeat protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001124119.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Leucine-rich repeat family protein
    NP_001117591.1
    • Leucine-rich repeat family protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: embryo, pedicel, carpel, stamen; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: PEP1 receptor 1 (TAIR:AT1G73080.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      27481785..27484078
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001124119.2 → NP_001117591.1  Leucine-rich repeat family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001117591.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9SSM0
      Conserved Domains (4) summary
      cd00116
      Location:359 → 586
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00033
      Location:99 → 122
      LRR_RI; leucine-rich repeat [structural motif]
      pfam08263
      Location:27 → 70
      LRRNT_2; Leucine rich repeat N-terminal domain
      pfam13855
      Location:97 → 157
      LRR_8; Leucine rich repeat
    Nucleotide Protein
    Heading Accession and Version

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