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    PLDALPHA2 phospholipase D alpha 2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841689, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PLDALPHA2
    Official Full Name
    phospholipase D alpha 2
    Primary source
    TAIR:AT1G52570
    Locus tag
    AT1G52570
    See related
    Araport:AT1G52570
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F6D8.21; F6D8_21; PHOSPHOLIPASE D; phospholipase D alpha 2
    Summary
    member of C2-PLD subfamily
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    Genomic context

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    See PLDALPHA2 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (19583617..19587531, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene HSP20-like chaperones superfamily protein Neighboring gene cytochrome P450 family protein Neighboring gene ncRNA Neighboring gene RHOMBOID-like protein 5 Neighboring gene Putative thiol-disulfide oxidoreductase DCC

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification and dynamics of Arabidopsis adaptor protein-2 complex and its involvement in floral organ development. Yamaoka S, et al. Plant Cell, 2013 Aug. PMID 23975897, Free PMC Article
    2. Proteomic study of the Arabidopsis thaliana chloroplastic envelope membrane utilizing alternatives to traditional two-dimensional electrophoresis. Froehlich JE, et al. J Proteome Res, 2003 Jul-Aug. PMID 12938931
    3. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
    4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    NM_001333553.1
    NM_001333554.1
    NM_104135.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables N-acylphosphatidylethanolamine-specific phospholipase D activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables phospholipase D activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables phospholipase D activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    involved_in phosphatidylcholine metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast envelope HDA PubMed 
    located_in cytosol HDA PubMed 
    located_in nucleus HDA PubMed 

    General protein information

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    Preferred Names
    phospholipase D alpha 2
    NP_175666.1
    • phospholipase D alpha 2 (PLDALPHA2); FUNCTIONS IN: phospholipase D activity; INVOLVED IN: phosphatidylcholine metabolic process, metabolic process; LOCATED IN: chloroplast envelope; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phospholipase D (InterPro:IPR015679), Phospholipase D, plant (InterPro:IPR011402), Phospholipase D/Transphosphatidylase (InterPro:IPR001736), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: phospholipase D alpha 1 (TAIR:AT3G15730.1); Has 2026 Blast hits to 1555 proteins in 414 species: Archae - 2; Bacteria - 579; Metazoa - 311; Fungi - 419; Plants - 577; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      19583617..19587531 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104135.3 → NP_175666.1  phospholipase D alpha 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175666.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SSQ9
      UniProtKB/TrEMBL
      A0A178WFN9, A0A5S9WLP7, A0A654EHV2
      Conserved Domains (1) summary
      PLN02270
      Location:1 → 810
      PLN02270; phospholipase D alpha

    2. NM_001333553.1 → NP_001322921.1  phospholipase D alpha 2 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SSQ9
      UniProtKB/TrEMBL
      A0A178WFN9, A0A5S9WLP7, A0A654EHV2
      Conserved Domains (1) summary
      PLN02270
      Location:1 → 810
      PLN02270; phospholipase D alpha

    3. NM_001333554.1 → NP_001322920.1  phospholipase D alpha 2 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SSQ9
      UniProtKB/TrEMBL
      A0A178WFN9, A0A5S9WLP7, A0A654EHV2
      Conserved Domains (1) summary
      PLN02270
      Location:1 → 810
      PLN02270; phospholipase D alpha
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SSQ9.1

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