U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    CAAX amino terminal protease family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837988, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    CAAX amino terminal protease family protein
    Primary source
    TAIR:AT1G14270
    Locus tag
    AT1G14270
    See related
    Araport:AT1G14270
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F14L17.3; F14L17_3
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 1
    Exon count:
    10
    Sequence:
    Chromosome: 1; NC_003070.9 (4874875..4877256, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene GDA1/CD39 nucleoside phosphatase family protein Neighboring gene GDA1/CD39 nucleoside phosphatase family protein Neighboring gene RING/FYVE/PHD zinc finger superfamily protein Neighboring gene phytochrome kinase substrate 2 Neighboring gene sphingoid base hydroxylase 2

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help
    NM_001084063.1
    NM_001123813.1
    NM_101293.5
    NM_202094.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables metalloendopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in CAAX-box protein processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    CAAX amino terminal protease family protein
    NP_001077532.1
    • CAAX amino terminal protease family protein; INVOLVED IN: proteolysis; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Abortive infection protein (InterPro:IPR003675); BEST Arabidopsis thaliana protein match is: CAAX amino terminal protease family protein (TAIR:AT5G60750.1); Has 3768 Blast hits to 3768 proteins in 1001 species: Archae - 88; Bacteria - 3268; Metazoa - 0; Fungi - 0; Plants - 132; Viruses - 0; Other Eukaryotes - 280 (source: NCBI BLink).
    NP_001117285.1
    • CAAX amino terminal protease family protein; INVOLVED IN: proteolysis; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Abortive infection protein (InterPro:IPR003675); BEST Arabidopsis thaliana protein match is: CAAX amino terminal protease family protein (TAIR:AT5G60750.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_563943.2
    • CAAX amino terminal protease family protein; INVOLVED IN: proteolysis; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Abortive infection protein (InterPro:IPR003675); BEST Arabidopsis thaliana protein match is: CAAX amino terminal protease family protein (TAIR:AT5G60750.1); Has 3763 Blast hits to 3760 proteins in 994 species: Archae - 88; Bacteria - 3260; Metazoa - 0; Fungi - 0; Plants - 134; Viruses - 0; Other Eukaryotes - 281 (source: NCBI BLink).
    NP_973823.1
    • CAAX amino terminal protease family protein; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Abortive infection protein (InterPro:IPR003675); BEST Arabidopsis thaliana protein match is: CAAX amino terminal protease family protein (TAIR:AT5G60750.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      4874875..4877256 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101293.5 → NP_563943.2  CAAX amino terminal protease family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563943.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WHE4, F4HUI0, Q8LAZ5
      Conserved Domains (2) summary
      COG1266
      Location:187 → 344
      YdiL; Membrane protease YdiL, CAAX protease family [Posttranslational modification, protein turnover, chaperones]
      pfam02517
      Location:243 → 330
      Abi; CAAX protease self-immunity

    2. NM_001084063.1 → NP_001077532.1  CAAX amino terminal protease family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077532.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8RX00
      Conserved Domains (2) summary
      COG1266
      Location:61 → 218
      YdiL; Membrane protease YdiL, CAAX protease family [Posttranslational modification, protein turnover, chaperones]
      pfam02517
      Location:117 → 204
      Abi; CAAX protease self-immunity

    3. NM_202094.2 → NP_973823.1  CAAX amino terminal protease family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973823.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WH42, A8MQF9
      Conserved Domains (2) summary
      COG1266
      Location:81 → 238
      YdiL; Membrane protease YdiL, CAAX protease family [Posttranslational modification, protein turnover, chaperones]
      pfam02517
      Location:137 → 224
      Abi; CAAX protease self-immunity

    4. NM_001123813.1 → NP_001117285.1  CAAX amino terminal protease family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001117285.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8RX00
      Conserved Domains (2) summary
      COG1266
      Location:61 → 218
      YdiL; Membrane protease YdiL, CAAX protease family [Posttranslational modification, protein turnover, chaperones]
      pfam02517
      Location:117 → 204
      Abi; CAAX protease self-immunity
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.