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    transcriptional factor B3 family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839209, updated on 18-Sep-2024

    Summary

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    Official Full Name
    transcriptional factor B3 family protein
    Primary source
    TAIR:AT1G26680
    Locus tag
    AT1G26680
    See related
    Araport:AT1G26680
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T24P13.6; T24P13_6
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    10
    Sequence:
    Chromosome: 1; NC_003070.9 (9219460..9223795)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Mediator complex, subunit Med10 Neighboring gene Vesicle transport v-SNARE family protein Neighboring gene emp24/gp25L/p24 family/GOLD family protein Neighboring gene ncRNA Neighboring gene Seven transmembrane MLO family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    NM_001332725.1
    NM_102431.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    transcriptional factor B3 family protein
    NP_173990.2
    • transcriptional factor B3 family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: chloroplast; EXPRESSED IN: ovule, embryo; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: Transcriptional factor B3 family protein (TAIR:AT2G24645.1); Has 880 Blast hits to 315 proteins in 21 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 864; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      9219460..9223795
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001332721.1 → NP_001323081.1  transcriptional factor B3 family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AVY9, A0A7G2DTB7

    2. NM_001332722.1 → NP_001323082.1  transcriptional factor B3 family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AW16, A0A7G2DTB7

    3. NM_001332723.1 → NP_001323079.1  transcriptional factor B3 family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WFQ4, A0A1P8AVZ6, A0A384LI42, A0A7G2DTB7

    4. NM_001332724.1 → NP_001323080.1  transcriptional factor B3 family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AVZ8, A0A7G2DTB7

    5. NM_102431.4 → NP_173990.2  transcriptional factor B3 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173990.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q84WP3, Q9LQY4
      UniProtKB/TrEMBL
      A0A7G2DW46
      Conserved Domains (2) summary
      smart01019
      Location:732 → 823
      B3; B3 DNA binding domain
      pfam02362
      Location:154 → 249
      B3; B3 DNA binding domain

    6. NM_001332725.1 → NP_001323078.1  transcriptional factor B3 family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AVV7
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q84WP3.2

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