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    Tetrapyrrole (Corrin/Porphyrin) Methylase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841078, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Tetrapyrrole (Corrin/Porphyrin) Methylase
    Primary source
    TAIR:AT1G45110
    Locus tag
    AT1G45110
    See related
    Araport:AT1G45110
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F27F5.18; F27F5_18
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    9
    Sequence:
    Chromosome: 1; NC_003070.9 (17052475..17054827)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein Neighboring gene pseudo Neighboring gene beta-galactosidase 5

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_103586.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within methylation ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Tetrapyrrole (Corrin/Porphyrin) Methylase
    NP_175126.2
    • Tetrapyrrole (Corrin/Porphyrin) Methylases; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: metabolic process; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0011, conserved site (InterPro:IPR018063), Tetrapyrrole methylase (InterPro:IPR000878), Tetrapyrrole methylase, subdomain 1 (InterPro:IPR014777), Uncharacterised protein family UPF0011 (InterPro:IPR008189); Has 8880 Blast hits to 8878 proteins in 2458 species: Archae - 59; Bacteria - 5736; Metazoa - 2; Fungi - 2; Plants - 84; Viruses - 0; Other Eukaryotes - 2997 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      17052475..17054827
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_103586.4 → NP_175126.2  Tetrapyrrole (Corrin/Porphyrin) Methylase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175126.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W2L9, Q6NQA0, Q9MAJ9
      Conserved Domains (1) summary
      cd11648
      Location:58 → 274
      RsmI; Ribosomal RNA small subunit methyltransferase I (RsmI), also known as rRNA (cytidine-2'-O-)-methyltransferase
    Nucleotide Protein
    Heading Accession and Version

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