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    WRKY65 WRKY DNA-binding protein 65 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839802, updated on 18-Sep-2024

    Summary

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    Official Symbol
    WRKY65
    Official Full Name
    WRKY DNA-binding protein 65
    Primary source
    TAIR:AT1G29280
    Locus tag
    AT1G29280
    See related
    Araport:AT1G29280
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATWRKY65; F28N24.4; F28N24_4; WRKY DNA-binding protein 65; WRKY DNA-BINDING PROTEIN 65
    Summary
    member of WRKY Transcription Factor; Group II-e
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    Genomic context

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    See WRKY65 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (10236337..10237990)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene transcription factor bHLH35-like protein Neighboring gene B-cell lymphoma 6 protein Neighboring gene intracellular protein transporter, putative (DUF641)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The WRKY superfamily of plant transcription factors. Eulgem T, et al. Trends Plant Sci, 2000 May. PMID 10785665
    2. Transcriptional regulation of nitrogen-associated metabolism and growth. Gaudinier A, et al. Nature, 2018 Nov. PMID 30356219
    3. MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays. Popescu SC, et al. Genes Dev, 2009 Jan 1. PMID 19095804, Free PMC Article
    4. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
    5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_102668.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within regulation of DNA-templated transcription ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    WRKY DNA-binding protein 65
    NP_174222.2
    • WRKY DNA-binding protein 65 (WRKY65); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 69 (TAIR:AT3G58710.1); Has 3604 Blast hits to 3142 proteins in 247 species: Archae - 4; Bacteria - 64; Metazoa - 46; Fungi - 24; Plants - 3284; Viruses - 4; Other Eukaryotes - 178 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      10236337..10237990
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102668.4 → NP_174222.2  WRKY DNA-binding protein 65 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_174222.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LP56
      UniProtKB/TrEMBL
      A0A178W690, A0A178W6S1, A0A384LK50, Q0V866
      Conserved Domains (1) summary
      smart00774
      Location:73 → 131
      WRKY; DNA binding domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LP56.1

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