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    Carbohydrate-binding X8 domain superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818968, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Carbohydrate-binding X8 domain superfamily protein
    Primary source
    TAIR:AT2G43660
    Locus tag
    AT2G43660
    See related
    Araport:AT2G43660
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F18O19.23
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    4
    Sequence:
    Chromosome: 2; NC_003071.7 (18103639..18104591, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Signal recognition particle, SRP9/SRP14 subunit Neighboring gene ncRNA Neighboring gene Sas10/U3 ribonucleoprotein (Utp) family protein Neighboring gene Carbohydrate-binding X8 domain superfamily protein Neighboring gene IQ-domain 14

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_180067.1
    NM_201951.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Carbohydrate-binding X8 domain superfamily protein
    NP_850398.1
    • Carbohydrate-binding X8 domain superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: inflorescence meristem, hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: Carbohydrate-binding X8 domain superfamily protein (TAIR:AT2G43670.1); Has 1208 Blast hits to 1161 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1208; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_973680.1
    • Carbohydrate-binding X8 domain superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: inflorescence meristem, hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: Carbohydrate-binding X8 domain superfamily protein (TAIR:AT2G43670.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      18103639..18104591 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_201951.2 → NP_973680.1  Carbohydrate-binding X8 domain superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_973680.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VQF5, A0A5S9X6P2, F4IS25
      Conserved Domains (1) summary
      smart00768
      Location:34 → 119
      X8; Possibly involved in carbohydrate binding

    2. NM_180067.1 → NP_850398.1  Carbohydrate-binding X8 domain superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850398.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VQF5, A0A5S9X6P2, Q84JP2
      Conserved Domains (1) summary
      smart00768
      Location:33 → 118
      X8; Possibly involved in carbohydrate binding
    Nucleotide Protein
    Heading Accession and Version

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