Protein kinase superfamily protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: Protein kinase superfamily protein
Primary source: TAIR:AT1G11050
Locus tag: AT1G11050
See related: Araport:AT1G11050
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: T19D16.6; T19D16_6
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 1

Exon count:: 1

Sequence:: Chromosome: 1; NC_003070.9 (3681679..3684169)

Chromosome 1 - NC_003070.9 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

At1g11050_Arabidopsis_lyrata_ssp._lyrata_CAN1 (e-PCR)
- UniSTS:510261

At1g11050_Arabidopsis_lyrata_ssp._petraea_GER1 (e-PCR)
- UniSTS:510261

Homology

Orthologs from OrthoDB

NM_100978.2

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables kinase activity	ISS Inferred from Sequence or Structural Similarity more info
enables protein serine/threonine kinase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within phosphorylation	ISS Inferred from Sequence or Structural Similarity more info

Component	Evidence Code	Pubs
located_in chloroplast	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: Protein kinase superfamily protein

NP_172572.1

Protein kinase superfamily protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: receptor-like kinase in in flowers 3 (TAIR:AT2G48010.1); Has 115297 Blast hits to 114175 proteins in 4324 species: Archae - 104; Bacteria - 13350; Metazoa - 42303; Fungi - 9816; Plants - 32853; Viruses - 335; Other Eukaryotes - 16536 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003070.9 Reference assembly

Range

3681679..3684169

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_100978.2 → NP_172572.1 Protein kinase superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_172572.1

Status: REVIEWED

UniProtKB/Swiss-Prot

O04086, Q56YN4, Q8LPJ9

UniProtKB/TrEMBL

A0A178WDR9, A0A5S9TTY9, A0A7G2DSA5

Conserved Domains (2) summary

cd14066
Location:301 → 581

STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs

pfam19160
Location:21 → 184

SPARK