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    actin cross-linking protein (DUF569) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843325, updated on 18-Sep-2024

    Summary

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    Official Full Name
    actin cross-linking protein (DUF569)
    Primary source
    TAIR:AT1G69890
    Locus tag
    AT1G69890
    See related
    Araport:AT1G69890
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T17F3.8; T17F3_8
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (26323086..26324946, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene nitrate transporter 1.7 Neighboring gene thioredoxin H-type 8 Neighboring gene Actin cross-linking protein Neighboring gene Protein kinase superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Functional Insight of Nitric-Oxide Induced DUF Genes in Arabidopsis thaliana. Nabi RBS, et al. Front Plant Sci, 2020. PMID 32765550, Free PMC Article
    2. Integrative Analysis from the Epigenome to Translatome Uncovers Patterns of Dominant Nuclear Regulation during Transient Stress. Lee TA, et al. Plant Cell, 2019 Nov. PMID 31519798, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_105657.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within cellular response to hypoxia HEP PubMed 
    acts_upstream_of_or_within response to nitric oxide IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    actin cross-linking protein (DUF569)
    NP_564980.1
    • CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF569 (InterPro:IPR007679), Actin cross-linking (InterPro:IPR008999); BEST Arabidopsis thaliana protein match is: Actin cross-linking protein (TAIR:AT1G27100.1); Has 237 Blast hits to 216 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 237; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      26323086..26324946 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105657.4 → NP_564980.1  actin cross-linking protein (DUF569) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564980.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WEN4, Q8H7D7, Q9CAS2
      Conserved Domains (1) summary
      pfam04601
      Location:1 → 139
      DUF569; Domain of unknown function (DUF569)
    Nucleotide Protein
    Heading Accession and Version

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