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    LOX4 PLAT/LH2 domain-containing lipoxygenase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843584, updated on 18-Sep-2024

    Summary

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    Official Symbol
    LOX4
    Official Full Name
    PLAT/LH2 domain-containing lipoxygenase family protein
    Primary source
    TAIR:AT1G72520
    Locus tag
    AT1G72520
    See related
    Araport:AT1G72520
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    Arabidopsis thaliana lipoxygenase 4; ATLOX4; lipoxygenase 4; T10D10.1; T10D10_1
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    Genomic context

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    See LOX4 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (27308513..27312756)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene DUF1677 family protein (DUF1677) Neighboring gene ncRNA Neighboring gene plastid developmental protein DAG Neighboring gene ncRNA Neighboring gene Protein kinase superfamily protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Expression profiling of the host response to bacterial infection: the transition from basal to induced defence responses in RPM1-mediated resistance. de Torres M, et al. Plant J, 2003 Feb. PMID 12609040
    2. Arabidopsis lox3 lox4 double mutants are male sterile and defective in global proliferative arrest. Caldelari D, et al. Plant Mol Biol, 2011 Jan. PMID 21052784
    3. Phytochrome B-mediated activation of lipoxygenase modulates an excess red light-induced defence response in Arabidopsis. Zhao Y, et al. J Exp Bot, 2014 Sep. PMID 24916071, Free PMC Article
    4. A gene encoding a chloroplast-targeted lipoxygenase in tomato leaves is transiently induced by wounding, systemin, and methyl jasmonate. Heitz T, et al. Plant Physiol, 1997 Jul. PMID 9232884, Free PMC Article
    5. Diversity of the enzymatic activity in the lipoxygenase gene family of Arabidopsis thaliana. Bannenberg G, et al. Lipids, 2009 Feb. PMID 18949503

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_105911.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables linoleate 13S-lipoxygenase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within anther dehiscence IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within anther development IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within defense response TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within jasmonic acid biosynthetic process TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within lipid oxidation IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in oxylipin biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within pollen development IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in response to bacterium IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to ozone IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to wounding IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to wounding TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within stamen filament development IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    PLAT/LH2 domain-containing lipoxygenase family protein
    NP_177396.1
    • PLAT/LH2 domain-containing lipoxygenase family protein; FUNCTIONS IN: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, lipoxygenase activity, iron ion binding, metal ion binding; INVOLVED IN: growth, jasmonic acid biosynthetic process, response to wounding, defense response; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Lipoxygenase, iron binding site (InterPro:IPR020833), Lipoxygenase, C-terminal (InterPro:IPR013819), Lipoxygenase, LH2 (InterPro:IPR001024), Lipase/lipooxygenase, PLAT/LH2 (InterPro:IPR008976), Lipoxygenase, conserved site (InterPro:IPR020834), Lipoxygenase (InterPro:IPR000907), Lipoxygenase, plant (InterPro:IPR001246); BEST Arabidopsis thaliana protein match is: lipoxygenase 3 (TAIR:AT1G17420.1); Has 1471 Blast hits to 1433 proteins in 182 species: Archae - 0; Bacteria - 79; Metazoa - 528; Fungi - 49; Plants - 786; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      27308513..27312756
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105911.5 → NP_177396.1  PLAT/LH2 domain-containing lipoxygenase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177396.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9CAG9, Q9FNX8
      UniProtKB/TrEMBL
      A0A654EPV9
      Conserved Domains (3) summary
      PLN02264
      Location:1 → 926
      PLN02264; lipoxygenase
      cd01751
      Location:90 → 229
      PLAT_LH2; PLAT/ LH2 domain of plant lipoxygenase related proteins. Lipoxygenases are nonheme, nonsulfur iron dioxygenases that act on lipid substrates containing one or more (Z,Z)-1,4-pentadiene moieties. In plants, the immediate products are involved in defense ...
      pfam00305
      Location:240 → 909
      Lipoxygenase; Lipoxygenase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FNX8.1

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