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    DNA ligase (DUF1666) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843721, updated on 18-Sep-2024

    Summary

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    Official Full Name
    DNA ligase (DUF1666)
    Primary source
    TAIR:AT1G73850
    Locus tag
    AT1G73850
    See related
    Araport:AT1G73850
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F2P9.28; F2P9_28
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    7
    Sequence:
    Chromosome: 1; NC_003070.9 (27766941..27770841)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene hydroxyproline-rich glycoprotein family protein Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene B-box type zinc finger protein with CCT domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification and characterization of nuclear pore complex components in Arabidopsis thaliana. Tamura K, et al. Plant Cell, 2010 Dec. PMID 21189294, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001334608.1
    NM_106045.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    DNA ligase (DUF1666)
    NP_001319378.1
    • FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: endomembrane system, ribosome, intracellular; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein L34e (InterPro:IPR008195), Protein of unknown function DUF1666 (InterPro:IPR012870); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1666) (TAIR:AT3G20260.1); Has 1252 Blast hits to 1091 proteins in 184 species: Archae - 4; Bacteria - 49; Metazoa - 367; Fungi - 151; Plants - 117; Viruses - 41; Other Eukaryotes - 523 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      27766941..27770841
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001334608.1 → NP_001319378.1  DNA ligase (DUF1666) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WM70, A0A384KE04, A0A654EQA6, F4HS08
      Conserved Domains (1) summary
      pfam07891
      Location:385 → 633
      DUF1666; Protein of unknown function (DUF1666)

    2. NM_106045.4 → NP_177526.3  DNA ligase (DUF1666) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177526.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WM70, A0A384KE04, A0A654EQA6, F4HS08
      Conserved Domains (1) summary
      pfam07891
      Location:385 → 633
      DUF1666; Protein of unknown function (DUF1666)
    Nucleotide Protein
    Heading Accession and Version

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