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    6-phosphogluconate dehydrogenase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843458, updated on 18-Sep-2024

    Summary

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    Official Full Name
    6-phosphogluconate dehydrogenase family protein
    Primary source
    TAIR:AT1G71180
    Locus tag
    AT1G71180
    See related
    Araport:AT1G71180
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F23N20.17; F23N20_17
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (26832267..26833709)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene 3-ketoacyl-CoA synthase 7 Neighboring gene 6-phosphogluconate dehydrogenase family protein Neighboring gene senescence associated gene 18 Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_105787.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables 3-hydroxyisobutyrate dehydrogenase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables NAD binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables NADP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in valine catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    6-phosphogluconate dehydrogenase family protein
    NP_565014.1
    • 6-phosphogluconate dehydrogenase family protein; FUNCTIONS IN: coenzyme binding, oxidoreductase activity, phosphogluconate dehydrogenase (decarboxylating) activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, pentose-phosphate shunt, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 6-phosphogluconate dehydrogenase, NAD-binding (InterPro:IPR006115), Dehydrogenase, multihelical (InterPro:IPR013328), 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), 3-hydroxyacid dehydrogenase/reductase (InterPro:IPR015815), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: 6-phosphogluconate dehydrogenase family protein (TAIR:AT1G71170.1); Has 16470 Blast hits to 16450 proteins in 2208 species: Archae - 156; Bacteria - 10495; Metazoa - 327; Fungi - 372; Plants - 276; Viruses - 0; Other Eukaryotes - 4844 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      26832267..26833709
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105787.2 → NP_565014.1  6-phosphogluconate dehydrogenase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565014.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q949M8, Q9C990
      UniProtKB/TrEMBL
      A0A178W9X0
      Conserved Domains (3) summary
      COG2084
      Location:47 → 312
      MmsB; 3-hydroxyisobutyrate dehydrogenase or related beta-hydroxyacid dehydrogenase [Lipid transport and metabolism]
      pfam03446
      Location:43 → 195
      NAD_binding_2; NAD binding domain of 6-phosphogluconate dehydrogenase
      pfam14833
      Location:197 → 274
      NAD_binding_11; NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q949M8.1

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